Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182042g00004 ATGGAGCTTGCATCAGTGAAGAGTGAATTCAATCCAAGATGTAATAGGTTACACATTATGGTGGATGGAGGAGAGACTAATGCTTCCAGGTGTGTCAAAAGGCGGCGAAGAGATTCGCCTCTGCCTCTGACGGTGTTAGGGGGCAATGAACAACAAGGTGAACAGCCGGAAGCACAACAGACGCCACAGGGTGGCCAATCAACCCCCAGCACCGTGAAGAGAAGCTCCAGGTTCAGAGGAGTTAGCAGGCACAGATGGACTGGAAGGTATGAAGCACATCTATGGGATAAAGGGACATGGAATCCAACTCAGAAAAAGAAAGGAAAGCAAGTGTATTTGGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTATTGGGGAACATCGACATTCACCAATTTCCCTGTATCAGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGGAGAAGCAGTGGATTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGAAGAGTGTTTGGCAACAAGTACCTCTACCTTGGAACTTACAGTACACAAGAAGAGGCAGCTCGCGCATATGATATTGCGGCAATCGAATACAGAGGCATAAATGCTGTGACAAACTTTGACTTGAGCACTTACATCAGATGGCTAAGACCAGGAGAACCACACTCTACTGCATCCCGAGATCAAAAGGCAAGCACAGACTCGCAGATGTTTACAACCTCTAAAGCCATCCAAGCCGCAGGAGCTGCCAAGCTATCAAACTTCAACTTCCATCCAGTCCCTGCAAGCGAATTGGACATCACCAAGAAGCAAGAGTTTTCCAAGTTTGCGGCACCTTTAAGTCCATGCTATAAGTCTTCTTCATCTTCCCCAACAGCATTAGGACTCCTCCTAAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAACCTGAATTCTGCTAATGAAGAAGCTGAAGAAGTTGAAGTGAGATATCCACAAGAGGGCAGTGATGGGATTGGAGGGATTCTTGATAACAATGACACTAACAGTATATCTTACTTTGGCTCTTCTTCCAATATCAACAGATTACCTAACTTGGTGTCTCCAGAAAGCAGCAAAATGCCAATGTTTCACAGAACTGTTACCCCATCTCTGTGGAATGGTGCTTTCAACATTTCTGACTGA 1254 0.4434 MELASVKSEFNPRCNRLHIMVDGGETNASRCVKRRRRDSPLPLTVLGGNEQQGEQPEAQQTPQGGQSTPSTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGEPHSTASRDQKASTDSQMFTTSKAIQAAGAAKLSNFNFHPVPASELDITKKQEFSKFAAPLSPCYKSSSSSPTALGLLLKSSVFRELMQRNLNSANEEAEEVEVRYPQEGSDGIGGILDNNDTNSISYFGSSSNINRLPNLVSPESSKMPMFHRTVTPSLWNGAFNISD 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182042g00004 417 FunFam AP2-like ethylene-responsive transcription factor 76 145 - -
Stsc182042g00004 417 MobiDBLite consensus disorder prediction 45 76 - -
Stsc182042g00004 417 ProSiteProfiles AP2/ERF domain profile. 179 237 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 SUPERFAMILY DNA-binding domain 76 145 IPR016177 GO:0003677
Stsc182042g00004 417 Gene3D AP2/ERF domain 76 145 IPR036955 GO:0003700|GO:0006355
Stsc182042g00004 417 Gene3D AP2/ERF domain 178 239 IPR036955 GO:0003700|GO:0006355
Stsc182042g00004 417 SMART rav1_2 179 243 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 SMART rav1_2 77 149 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 PRINTS Ethylene responsive element binding protein signature 219 239 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 Pfam AP2 domain 76 135 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 Pfam AP2 domain 178 229 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 56 304 - -
Stsc182042g00004 417 ProSiteProfiles AP2/ERF domain profile. 77 143 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 MobiDBLite consensus disorder prediction 33 80 - -
Stsc182042g00004 417 CDD AP2 178 239 IPR001471 GO:0003700|GO:0006355
Stsc182042g00004 417 FunFam AP2-like ethylene-responsive transcription factor 178 239 - -
Stsc182042g00004 417 Coils Coil 333 353 - -
Stsc182042g00004 417 SUPERFAMILY DNA-binding domain 178 239 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182042g00004 Stsc-Chr182042 15477 17558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182042g00004 23 241 AP2-EREBP Transcription Factor Family AT5G57390 59.817 1.14e-84 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc182042g00004 AP2 7.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182042g00004 - - adu:107481246 750.355