Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182042g00003 ATGATTCCGAGTAAGAATGCAAACACGTTAGAGACGGAAAAGTACTGGGATAAACATGAAGGAGAGTTCGATGGTTACTGGAAGAAAAGAGCCCAGATCGCTGAAATTGAAAACAAGAAAGCCTATTTCCCTGATCCCTATGCCGTCTCCGGCAACTTCACCGCTGCCATTAGCGATGACATTATTGGGAAGAATGGAGGAAGAAGGACGTTGAAAGGAAAGAACAGAGGAGCAGCTTGCATGGCGACGAACCCCATTGACAGGTGCTGGAGGTGTGACCCACACTGGGCTAATAACCGCCAAAAACTTGCAGATTGTGTTCAGGGATTCGGAAGAAACACGAAAGGAGGGAAAGGTGGAAAAATCTACGTGATCAACGACCCTTCCGACGGTGATTTGCTGGCACCAAAACCCGGCACTATCCGGCATGCAGTGACCAGAACAGAACCGTTGTGGATCATCTTCTCCCGGAACATGGTGATCCACCTCCAGCAAGAGCTCATCATGGCTAGCAACAAGACCATTGATGGAAGAGGTTTTGATATCCAAATCAGAAATGGCTGTGGCATCACCATCCAGTTCATCAAGAACGTGATTATCCATGGAATCAAGGTGTTCAACATCCAGGTCGGGAAAGGTGGCATGATTAGGGACTCTGAAACTCATTACGGGTTTAGGACACAGAGTGATGGTGATGGTATCTCCATCTTTGGTGCAAGCAACATCTGGATTGACCATGTTTCAATGAGAAACTGCTCAGATGGGTTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAATGGGCATTACACTGACCACAATGAGGTGATGCTGTTTGGAGCTAGTGACAGTTACACCGGTGATAAGATCATGCAGATCACGTTGGCATTCAACCACTATGGTAAGAGGTGTGTGCAGAGAATGCCAAGAGCCAGACATGGTTTTGTCCATGTTGTTAACAATGATTATACTCATTGGGAGATGTATGCCATCGGCGGCAGCATGAACCCTACCATCATCAGCGAGGGTAACAGGTTCATTGGCCCCGACAATCCATTCGCCAAAGAGATAACGAAGAGAGAGTATGCAGAAGAGAGCAAATGGAAGAGCTGGCAATGGAGATCGATAAATGATGAATACTTGAATGGAGCGTTCTTCATTCAATCGGGGGCAGAATTGAAGAACAGACCATTCTCAAGGATGGACATGATCACAGCGAAGCCAGGAACATATGTTGGAAGGCTTACACGCTTTGCTGGTGTTCTTCCATGCAAAATTGGCCTTAAATGCTAA 1302 0.4677 MIPSKNANTLETEKYWDKHEGEFDGYWKKRAQIAEIENKKAYFPDPYAVSGNFTAAISDDIIGKNGGRRTLKGKNRGAACMATNPIDRCWRCDPHWANNRQKLADCVQGFGRNTKGGKGGKIYVINDPSDGDLLAPKPGTIRHAVTRTEPLWIIFSRNMVIHLQQELIMASNKTIDGRGFDIQIRNGCGITIQFIKNVIIHGIKVFNIQVGKGGMIRDSETHYGFRTQSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARHGFVHVVNNDYTHWEMYAIGGSMNPTIISEGNRFIGPDNPFAKEITKREYAEESKWKSWQWRSINDEYLNGAFFIQSGAELKNRPFSRMDMITAKPGTYVGRLTRFAGVLPCKIGLKC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182042g00003 433 SUPERFAMILY Pectin lyase-like 84 424 IPR011050 -
Stsc182042g00003 433 Pfam Pectate lyase 167 349 IPR002022 -
Stsc182042g00003 433 Pfam Pectate lyase, N terminus 21 71 IPR007524 GO:0030570
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Stsc182042g00003 433 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Stsc182042g00003 433 Gene3D - 83 426 IPR012334 -
Stsc182042g00003 433 PANTHER PECTATE LYASE 18-RELATED 37 430 IPR045032 GO:0030570
Stsc182042g00003 433 SMART amb_all 158 355 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182042g00003 Stsc-Chr182042 12547 14236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182042g00003 23 433 Polysaccharide Lyase AT1G14420 59.155 4.52e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182042g00003 K01728 - gmx:100798579 685.256