Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182042g00002 ATGGCACCAAAAATTGAAGTTTTGGTGCCTTTCCTCCTTTGTTTGGCAACAGCCTTTATTCCCAGCCTCAATGCTAATATGTTGGAGTCCGATGAATATTTGAGGGAATTAGAACGTGAGTATGATCCTTACTGGTGGCAAAAATACCATACATCTATCATTAGAAACCAAGCTGCCGCTTTCCTTGATCCCTATGCCATCTCCGGCAACTTCACCGCTGCCATTAGCATGGATATTCTGGGAAAGAATGGAGGAAGAAGGTTGTTGAAAGGAAAGAACAAAGGAGCTCCATGTGTGGCAACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCACACTGGGCTGATAACCGTCAAAGGCTTGCAGATTGCGTGATGGGATTCGGCAAGAACACCAAGGGAGGTAAAGGAGGAAAATACTACGTCGTCACCGACCCTTCCGACGATGAATTGCTGGACCCCAAACCCGGCACTCTCCGCCATGCAGTCACAAGAACTGAACCTCTGTGGATCATCTTCTCCCACAGCATGGTCATCACTCTCCAGCAAGAACTCATCATGGCTGGCAACAAGACCATCGATGGCAGAGGCTTTGATGTCCAGATCGCACACGGTGCTGGCATCACCATCCAGTTCATCCAGAACGTCATCATCCATGGCATCAAGATCTACAACATCGTTTCCAAGAATGGCGGTATGATTAGGGACTCTGAAACTCATTACGGCCACAGAACTCGGAGTGACGGTGATGGTATCTCCATCTTCGGTGGTAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCAGATGGTTTGGTTGATGTGATTATGGGTTCCACCGCCATCACCATCTCCAATGGGCATTACACTGACCACGACCACGTGATGCTTTTCGGCGCCAGCGACAGCTACTCCGGTGATAAGGTGATGCAGATCACGTTGGCATTCAACCACTACGGAAAGAGGTGCGTGCAGAGAATGCCGAGAGTGAGATATGGATTCGTCCATGTTGTGAACAATGATTATACTCATTGGGAGATGTATGCCATTGGAGGGAACCAGAACCCTACGATTATCAGCGAGGGTAACAGGTTCATAGCACCTGAGAACAGGTTTGCAAAGGAGATCACAAAGAGAGAATACACAGAGGAGAGCATATGGAAGAACTGGCAATGGAGATCAATCAATGATGAGTACTTGAATGGAGCATTCTTCATCGAATCAGGACCTGAATTGAAGAACAGACCGTTCTCAAGCAAGGACATGATCACTGCAAAGCCAGGAACATATGTTGGACAGCTTACACGATATGCTGGTGTTCTTCCCTGCAAGATTGGACATCCCTGTTAA 1356 0.4786 MAPKIEVLVPFLLCLATAFIPSLNANMLESDEYLRELEREYDPYWWQKYHTSIIRNQAAAFLDPYAISGNFTAAISMDILGKNGGRRLLKGKNKGAPCVATNPIDRCWRCDPHWADNRQRLADCVMGFGKNTKGGKGGKYYVVTDPSDDELLDPKPGTLRHAVTRTEPLWIIFSHSMVITLQQELIMAGNKTIDGRGFDVQIAHGAGITIQFIQNVIIHGIKIYNIVSKNGGMIRDSETHYGHRTRSDGDGISIFGGSNIWIDHVSMRNCSDGLVDVIMGSTAITISNGHYTDHDHVMLFGASDSYSGDKVMQITLAFNHYGKRCVQRMPRVRYGFVHVVNNDYTHWEMYAIGGNQNPTIISEGNRFIAPENRFAKEITKREYTEESIWKNWQWRSINDEYLNGAFFIESGPELKNRPFSSKDMITAKPGTYVGQLTRYAGVLPCKIGHPC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182042g00002 451 Gene3D - 101 444 IPR012334 -
Stsc182042g00002 451 PANTHER PECTATE LYASE 18-RELATED 72 448 IPR045032 GO:0030570
Stsc182042g00002 451 SMART amb_all 176 373 IPR002022 -
Stsc182042g00002 451 Pfam Pectate lyase 188 367 IPR002022 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Stsc182042g00002 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Stsc182042g00002 451 SUPERFAMILY Pectin lyase-like 102 442 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182042g00002 Stsc-Chr182042 8737 10353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182042g00002 41 451 Polysaccharide Lyase AT1G14420 56.808 1.56e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182042g00002 K01728 - gmx:100798579 660.603