Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182038g00004 ATGATGAGAGAGGAAGATGAAGCCACACCACCCATGGATAATTCCAATCCAGTCATTTTCTTCAAGATCATACTTTCATCTTCTCTTGAAGATGGAAAACTTTTCCCAAACAGTTTCACTAAGAAATATGGAGATAGCTTATCAAACCCGGTGTTTCTCAAGCCTCCAGATGGAACTGAATGGAAAGTAGAGTGGACTAAGGATGATGATGGAATTTTTCTTGAACATGGTTGGGATGAGTTTGCTATATATTACAATCTAGATCATGGGCATTTGATGTTTTTTGAGTACAAAAACAGTTCTCAATTTGAGGTACAAATATGTGAAACCAGTGGCCTTGAAATAGATTATCCTTTCTATGTCATTCAACAAGAAAGTGAATACATTGAACGGTTAAAAAATAAGGCAGATCAAGTGTTCGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCACCAATGTCTTATCCTCAACTATTTAACATAATTGACACAACTAGAGAAGTTAGAACAAGCTACAATTTGCTAAACTTGCCACTTCTTGACCAAATTAATAGTAATGAGTGTCAAGGAACAAGCTTTGACAAGTCAGCATTTGCATCTATTAAAAAAGAATTGGATGAGGATATAGGTTGTAGCACTCCATATCCAAGAGTGGAGCAGTTAAGGGAAACCTTAAACAAAGCTACAACTTCCAAATCTAGACCAAACCCCTCTTTCATGGTTATCATGAAACCATCCTATGCTAATAGTTATACGTTGAATATCCCTTCAAGATTCACAGCGAAATATCTGAAAAAGAAAGCGACAAAGGCCATCCTTCAGGTGCATGATCAGGGGAGAACATGGCCTGTTGCTTGTAGTGTTGGCAAATTCAATTCTGGATGGAAGACATTCGCAAAAGATAATGATTTAAATGTAGGGGATCGTTGTGTTTTTGAGCTCACCAATCCCAAAGGCCTTTATTTTAAGGTATCCATATCTCGAATTGGAGAAGAGAAACTTCCACTATCACAAGTTGAAGGAGACAGAGTGGACTATGCTGAAAGCGAGAGTGACACCGTAATTAAAGTAAAAAAGAAAACTAAAAGAACTAAAATGGCGATTCCTCGGGATTTCGAGCCAGATGAAGAAACTCTGAAAGAAGCTAAGAAATTCACCTCAGAAAATCCATTTTTCATGGTCATTATAAAGCCGAGTTTTTTGGGGGAACGCAGACCGTGTATCCCACTTTTCTTGGTAAAAAATTACCTCCAAAAAACTCATATTGTTACATTTAAGTTTGGAGGGAGAGCGTGGCGTCTCAAGTTTCTGCATTACACAAAATACAAAACTGCAGTGAAGTTTTCCACTGGATGGGGGCTATTTTGTAGAGAATGTAAATTGAAAGCAAGAGATGTTTGTATCTTTGAGCTAATCAACAAAGAAGATGCAGTGTTTGATGTTCACTTGTTTAGGTGCCAAATCTAG 1473 0.3734 MMREEDEATPPMDNSNPVIFFKIILSSSLEDGKLFPNSFTKKYGDSLSNPVFLKPPDGTEWKVEWTKDDDGIFLEHGWDEFAIYYNLDHGHLMFFEYKNSSQFEVQICETSGLEIDYPFYVIQQESEYIERLKNKADQVFDDMPQSQNNRMKSPMSYPQLFNIIDTTREVRTSYNLLNLPLLDQINSNECQGTSFDKSAFASIKKELDEDIGCSTPYPRVEQLRETLNKATTSKSRPNPSFMVIMKPSYANSYTLNIPSRFTAKYLKKKATKAILQVHDQGRTWPVACSVGKFNSGWKTFAKDNDLNVGDRCVFELTNPKGLYFKVSISRIGEEKLPLSQVEGDRVDYAESESDTVIKVKKKTKRTKMAIPRDFEPDEETLKEAKKFTSENPFFMVIIKPSFLGERRPCIPLFLVKNYLQKTHIVTFKFGGRAWRLKFLHYTKYKTAVKFSTGWGLFCRECKLKARDVCIFELINKEDAVFDVHLFRCQI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182038g00004 490 SUPERFAMILY DNA-binding pseudobarrel domain 236 332 IPR015300 -
Stsc182038g00004 490 CDD B3_DNA 239 330 IPR003340 GO:0003677
Stsc182038g00004 490 Gene3D - 12 112 IPR015300 -
Stsc182038g00004 490 Pfam B3 DNA binding domain 241 327 IPR003340 GO:0003677
Stsc182038g00004 490 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Stsc182038g00004 490 Pfam B3 DNA binding domain 393 487 IPR003340 GO:0003677
Stsc182038g00004 490 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 377 487 IPR044837 -
Stsc182038g00004 490 SMART B3_2 241 332 IPR003340 GO:0003677
Stsc182038g00004 490 SMART B3_2 393 489 IPR003340 GO:0003677
Stsc182038g00004 490 SMART B3_2 20 111 IPR003340 GO:0003677
Stsc182038g00004 490 CDD B3_DNA 19 108 IPR003340 GO:0003677
Stsc182038g00004 490 SUPERFAMILY DNA-binding pseudobarrel domain 387 487 IPR015300 -
Stsc182038g00004 490 Gene3D - 373 489 IPR015300 -
Stsc182038g00004 490 Gene3D - 220 333 IPR015300 -
Stsc182038g00004 490 ProSiteProfiles B3 DNA-binding domain profile. 240 332 IPR003340 GO:0003677
Stsc182038g00004 490 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc182038g00004 490 CDD B3_DNA 392 487 IPR003340 GO:0003677
Stsc182038g00004 490 SUPERFAMILY DNA-binding pseudobarrel domain 14 110 IPR015300 -
Stsc182038g00004 490 ProSiteProfiles B3 DNA-binding domain profile. 393 489 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182038g00004 Stsc-Chr182038 11689 14776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182038g00004 237 488 B3 DNA Binding Superfamily AT3G18990 23.188 8.30e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc182038g00004 B3 1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182038g00004 - - adu:107471690 751.125