Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182038g00003 ATGACTTCCATGTGCAATTTGAGAAATAAGAAGAATGTGCCAAATACAATCCTTTTCTTCAAGATCATACTCTCTAAAACTCTTCAAGATGGCAATCTTCTCCCAAAAAGCTTCACTAAGAAACATGGTGGCGGTGTGCCAAATCCAGTGTATCTCAAGCCTTCAGATGGAACTGAATGGAAAGTTCATTGGACTAAGCATGATGGTAATATTCTGTTTGAGAAGGGTTGGAAAGAGTTTGCTGCAAATTACTCTCTTGATCGAGGGCATTTGTTGATGTTTGAGTTCAATGAATCTTCCCATGTTGGGGTACACATATGTGACATGAGTGGCCTTGAAATGGAGCTTCCTTTCCATGGAACACAAGATGGAAAGGACAAGAATGTCGACATCAGCGATAAAGCAGTTGAAGTGTTCGACGAAATGCCTCAAAGCCGCAACAATAGACTGAAATCACCAATGTCTTCTCCTCAACCATGTAAGAGACTCAGAACTTCTGGTACCGCTGGAGAAATTATAACAACCCACAGCTTGCAAAACTTTCCTACTCAGAAAGAATTGGATGAGGATATATGTGGTTTAATTCAATGTCCTGAAGTGGGAAAATCTTCTGAAGAAACCAAAGCTTTAAACAAAGCAACAACTTCTAAATCCAGGAAAAATCCCTCTTTCATGATCACCATGAAACAACACTATGTTAATAGTTATTCAATGCATATCCCGTTATGGTTCCAAGAAAAATGCTTGAAGAAAAGGCAGGTAGCTGCAATAATCCTTCAAATCCTCGATGGAAGAACATGGCCCGTTGGTTACAATGCTGGCAAGTTTAGTTCTGGATGGAAGAAATTTGCATCAGATAACAATTTAAAAGTGGGGGATGTTTGTGTTTTTGAGCTGACGAACCACAAAATCCTTTCGTTTAAGGTATCGATATCTAGAGCTGCACAAGAACTAAGTTTAGCTCTATCAAAAGATAAAGTCGAGGATGCTGAATACAAGCCAAACATTCCAAGGAAAGATAGAAAGACAATTCCAAGAAATTCGATGGTGATTAGTCGCCAACGCGGAACAAATGTAAGAACTATGGAAGAAGCTAAGAAATTCACCTCCGAAAATCCAGTTTTCAAGATCCTAATAAGACCGGGGTTTCTGCGATCAGGCAGACCGGCAGTACCAACCCCGTTTGTGAGAAATTACCTCAAAGAAAAGGATATTGTGCAATTCCAATTTGGAAACAAATTGTGGGATATAAAGTTACTGAAATACAAAGGGAAGAATCCATGCCTTTTTTCCAGTGGCTGGATTAATTTTGCTGAAGAGAATAAATTGGAAGCTGAAGATGTTTGTATCTGTGAGCTAATTAACATAGAAGATGCAGTGTTTGATGTCCACATTTTTAGGCGCCATCGCTAG 1413 0.3928 MTSMCNLRNKKNVPNTILFFKIILSKTLQDGNLLPKSFTKKHGGGVPNPVYLKPSDGTEWKVHWTKHDGNILFEKGWKEFAANYSLDRGHLLMFEFNESSHVGVHICDMSGLEMELPFHGTQDGKDKNVDISDKAVEVFDEMPQSRNNRLKSPMSSPQPCKRLRTSGTAGEIITTHSLQNFPTQKELDEDICGLIQCPEVGKSSEETKALNKATTSKSRKNPSFMITMKQHYVNSYSMHIPLWFQEKCLKKRQVAAIILQILDGRTWPVGYNAGKFSSGWKKFASDNNLKVGDVCVFELTNHKILSFKVSISRAAQELSLALSKDKVEDAEYKPNIPRKDRKTIPRNSMVISRQRGTNVRTMEEAKKFTSENPVFKILIRPGFLRSGRPAVPTPFVRNYLKEKDIVQFQFGNKLWDIKLLKYKGKNPCLFSSGWINFAEENKLEAEDVCICELINIEDAVFDVHIFRRHR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182038g00003 470 ProSiteProfiles B3 DNA-binding domain profile. 374 469 IPR003340 GO:0003677
Stsc182038g00003 470 SUPERFAMILY DNA-binding pseudobarrel domain 16 110 IPR015300 -
Stsc182038g00003 470 CDD B3_DNA 222 313 IPR003340 GO:0003677
Stsc182038g00003 470 Pfam B3 DNA binding domain 224 313 IPR003340 GO:0003677
Stsc182038g00003 470 Pfam B3 DNA binding domain 19 108 IPR003340 GO:0003677
Stsc182038g00003 470 Pfam B3 DNA binding domain 375 468 IPR003340 GO:0003677
Stsc182038g00003 470 CDD B3_DNA 18 108 IPR003340 GO:0003677
Stsc182038g00003 470 SMART B3_2 224 315 IPR003340 GO:0003677
Stsc182038g00003 470 SMART B3_2 19 110 IPR003340 GO:0003677
Stsc182038g00003 470 SMART B3_2 375 469 IPR003340 GO:0003677
Stsc182038g00003 470 MobiDBLite consensus disorder prediction 145 164 - -
Stsc182038g00003 470 SUPERFAMILY DNA-binding pseudobarrel domain 368 468 IPR015300 -
Stsc182038g00003 470 SUPERFAMILY DNA-binding pseudobarrel domain 218 313 IPR015300 -
Stsc182038g00003 470 Gene3D - 14 111 IPR015300 -
Stsc182038g00003 470 CDD B3_DNA 375 467 IPR003340 GO:0003677
Stsc182038g00003 470 Gene3D - 202 317 IPR015300 -
Stsc182038g00003 470 Gene3D - 355 469 IPR015300 -
Stsc182038g00003 470 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Stsc182038g00003 470 ProSiteProfiles B3 DNA-binding domain profile. 223 315 IPR003340 GO:0003677
Stsc182038g00003 470 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 360 468 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182038g00003 Stsc-Chr182038 7608 10604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182038g00003 360 467 B3 DNA Binding Superfamily AT3G18990 34.545 7.57e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc182038g00003 B3 7.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182038g00003 - - adu:107471690 454.136