Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182038g00002 ATGACTTCCAATGCAGTCCTTTTCTTCAAGATTATGCTCTCAAAATCTCTTCAGCAAGGGATACTTAGGCTTCCAAAGAAATTCACTAGAAAATATGGCGATTCTCTATCAAAGCCTGTGTTTCTCAAGCCTCCAGATGGAACTGAATGGAAAGTAGATTGGACTATGCATGATGCTCAGATTCTGTTTCAAGATGGTTGGAAAGAGTTTGTTGCATATTACTCTATAAAGCATGGGCATTTCTTGATGTTTGAATACAATGGAAATTCCCAATTTGGGGTAATAATATGTGACATGAGTGGCCTTGAAATAGAGTATCCTTTTAATGTTAATCAGCAAGAAAAGGATAACATTGATGAGAATAGTGATGAAGCAGTTCAAGTGTTCGATGAAATGCCTCAAAGACAAAACTATAGAAGGAAATCACCAATGTCTCAGCTTGATCAAAGCAATGCAGAAGAAGATGAAAGCGAGGATGACATTTCCATTAAAGATAGAAAGGAAACTCAAACGAGTTCAAATGGTGCTCCGGAGGATGCTGAGAAATTCACCACAGAAAATCCCTTTTTCATCATAACTGTAACAAAAAAAACTCTGGGCCTAAGCAGACCGGTAAGATTGTACCAGCTGACTTCGCCAAAAGGTACCTCGCAGAAAAGCAGATTGCCAAGGTAA 675 0.3852 MTSNAVLFFKIMLSKSLQQGILRLPKKFTRKYGDSLSKPVFLKPPDGTEWKVDWTMHDAQILFQDGWKEFVAYYSIKHGHFLMFEYNGNSQFGVIICDMSGLEIEYPFNVNQQEKDNIDENSDEAVQVFDEMPQRQNYRRKSPMSQLDQSNAEEDESEDDISIKDRKETQTSSNGAPEDAEKFTTENPFFIITVTKKTLGLSRPVRLYQLTSPKGTSQKSRLPR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182038g00002 224 MobiDBLite consensus disorder prediction 130 187 - -
Stsc182038g00002 224 SMART B3_2 8 100 IPR003340 GO:0003677
Stsc182038g00002 224 Gene3D - 2 101 IPR015300 -
Stsc182038g00002 224 PANTHER B3 DOMAIN-CONTAINING 4 160 - -
Stsc182038g00002 224 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Stsc182038g00002 224 Pfam B3 DNA binding domain 8 97 IPR003340 GO:0003677
Stsc182038g00002 224 CDD B3_DNA 7 98 IPR003340 GO:0003677
Stsc182038g00002 224 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182038g00002 Stsc-Chr182038 4295 6297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182038g00002 7 106 B3 DNA Binding Superfamily AT3G18990 47.000 2.77e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc182038g00002 B3 2.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182038g00002 - - adu:107471968 290.426