Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182038g00001 ATGGATATAGCTTCCTCTAGCCTCCAAAAAAACAAGCATTCTCTTGCCACTGTGATCCGTTTCTTCAAGATTGTTCTCAGAAAAAGCCTTGAAGATGGATATCTTAAAATACCAAACAAGTTCAGTAAGAAATATGGTGATGATATGCCAAATCCAGTGCATCTGAAGCCTCCGGATGGAACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTCTCTTTGAAAAGGGTTGGAAAGAATTTGCTAAATTTTACTCTCTGGATAATGGTCATTTGCTGTGGTTTGAGTATGATGGAACTTCTAACATCAAAGTACACATACTCGACATGAGTGGCCTTGAAATCGATTACCCCTCCAGTGATCGAATCAGGGATGACGATTCGGTTGAAATTTTGGATGAACCACCAGAAAGAGGCCGAGGCTGGCCAAGGAAAAAAGTGAAAGCAGAACCAAAGCAATCATGTCCTTCTAAAAGTAAAGTATCGAAAAGTGCCATCGAAACTGAAGAAGTGGAGAGAAACCTCAATAAACAAGAATTGAAGCAGCATGTCAAGAATGAAGAAGATAGTCAATCTGAAGAGACAGCAGAGTTTAAGCTTCCAATGGTTCACTTTGCCAAACCAGATAGAGATGTTGTTAGAGAAGCAAGGAAGTTCAAGTCAAAAAATCCTTCTTTCATAATCAAGATTAAGCAAATTCACCAAACAGGATCACCAGCAAGTTTTCCAGTTAGCTTCTTCAGATCACACTTCGAGAACACAAAGCAGCTTGCAAGTCTAAGTGTTGGAAAGAAGCAGTGGCCTGTAACATTAATCCATTATCCATGTTCGAAAAGAGCCCTTATCTCGTGCTTGCGCTTGTTCATTAGAGAAAATAACTTAAAAGCCGGAGATGTTTGTGTCTTTGAGCTCATTAACAGAGAATATCCTGAGCTTAAGGTTCATATTCGTCGAAGCCACGAAATAGCAAATTTCAGAAGCTCTTAA 993 0.3927 MDIASSSLQKNKHSLATVIRFFKIVLRKSLEDGYLKIPNKFSKKYGDDMPNPVHLKPPDGTQWKIDWTNHDGEILFEKGWKEFAKFYSLDNGHLLWFEYDGTSNIKVHILDMSGLEIDYPSSDRIRDDDSVEILDEPPERGRGWPRKKVKAEPKQSCPSKSKVSKSAIETEEVERNLNKQELKQHVKNEEDSQSEETAEFKLPMVHFAKPDRDVVREARKFKSKNPSFIIKIKQIHQTGSPASFPVSFFRSHFENTKQLASLSVGKKQWPVTLIHYPCSKRALISCLRLFIRENNLKAGDVCVFELINREYPELKVHIRRSHEIANFRSS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182038g00001 330 CDD B3_DNA 243 320 IPR003340 GO:0003677
Stsc182038g00001 330 CDD B3_DNA 20 111 IPR003340 GO:0003677
Stsc182038g00001 330 SUPERFAMILY DNA-binding pseudobarrel domain 20 113 IPR015300 -
Stsc182038g00001 330 SUPERFAMILY DNA-binding pseudobarrel domain 221 321 IPR015300 -
Stsc182038g00001 330 Gene3D - 16 114 IPR015300 -
Stsc182038g00001 330 Coils Coil 179 199 - -
Stsc182038g00001 330 Gene3D - 208 324 IPR015300 -
Stsc182038g00001 330 PANTHER B3 DOMAIN-CONTAINING 18 310 - -
Stsc182038g00001 330 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Stsc182038g00001 330 Pfam B3 DNA binding domain 242 321 IPR003340 GO:0003677
Stsc182038g00001 330 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677
Stsc182038g00001 330 MobiDBLite consensus disorder prediction 128 155 - -
Stsc182038g00001 330 SMART B3_2 21 113 IPR003340 GO:0003677
Stsc182038g00001 330 SMART B3_2 228 322 IPR003340 GO:0003677
Stsc182038g00001 330 MobiDBLite consensus disorder prediction 128 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182038g00001 Stsc-Chr182038 1675 3637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182038g00001 21 324 B3 DNA Binding Superfamily AT3G18990 25.223 8.88e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc182038g00001 B3 2.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182038g00001 - - aip:107621185 481.1