Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182035g00006 ATGGTGGTAGCATCAAATTCCTCGTCCTTGAACGAGGAACAAGAGGCCTTCCTCCATAGCGGGTGGACGGAAGGTCGTGACATCTCAAAACATTGTAACTGGACTGGTATTGTGTGCAATGAAGCTGGAAGAGTCACAGAGATTTCAACAGGGCGTTATTTTGTTATCCCTCCATCTGAATTGAGGAACTTCAATTTTACTGCATTTACCAATTTAATCCGTCTTGAACTCAGTGGTTTGGGACTCAAAGGTATCATTCCCAGCGAAATAAGCTCTGTTACAAAGCTTACGTATCTTGATCTATCCTCTAACCATCTTGAAGGTGAGTTGCCTGCTTCAATGTCAAATCTCACTCAACTTAGCTATTTTAATGTTTCAAACAATTTTCTTAGTGGTGTGATCCCTTCCTCTTTTAATCACTTGAAGTATTTGAAATGTCTATCCCTTGGTTCAAACCATATCCAAGGTCCCATCCCTATTGAACTAGGGCACTTGGTCCATCTGGAAGTTTTAGACCTTTCTCACAACAAGGTTTCCGGTGTCATACCATCTGGGATTGGACAACTCTCAAGGCTTTCAACTTTAGATATTTCCAACAATAACCTTGAGGGACCAATTCCATCTGGTATTCTAAACCATTGCAGAGTTGTGCAACTGAGTAACAACTCTTTAAGTGGTTTCATTCCTTCTCAAATTGGCAATCTTTCTTCTCTAGACCTTAGTTATAATAACCTCTCTGGAAACATACCTGAGGGACTCCATTCTGTACCAAACCTCAATCTGTCTTACAATTCCTTTGTTTTGGATCAGAGCTATTGTCATTTTCCAAAAGACTCATTGATTGGTAATAAGATATCAGGTCCTCCTTGCTCTTCTACTCTTGATGATGATTATCTTCCTTTACCTGTAATAATCTTAGGGTCAATCATTAATGGCATGTTGATTTCACTCGTTTTTGTATGTTGGGGAATTCATGTCTTTTGTCCATATGAGTTCAAATACGAGGAAAAGGGAAAGAATGGGGATATCTTCTCAATTTGGAACTATGATGGTAACATAGCATTTGAAGACATAATCAAAGCAACAGAAGACTTTGATATGAGGTACTGTATTGGAACAGGTGCTTATGGAAGTGTCTACAAAGCAAAACTTCCCAGTGGCAAAAGTGTGGCACTAAAGAAACTCCACAGAACAGAATCTGAAAATCCATCATTTTACAAGAGTTTCAACAACGAGATCAAGGTCTTAAGCGAAATACGCCACCGGAACATCATCCGGCTTTACGGATATTGTCTGCACAATGAGTGCATGTTTCTGATATACGAGTATATGGAAAAAGGAAGCTTGTTCTATAACCTAGCCATTGATGAAGAAGCTAAAGAGTTGAATTGGACCAAGAGAGTAAACATCATCAAAGGGACTGCATTTGCTCTCACTCATATGCACCATCATTGTACACCACCCATTGTTCATCGTGATGTAACTAGTACCAATGTTTTGCTGAGTTCAAATTTAGAGGCTTGTCTATCAGATTTTGGCACAGCTAAACTACTTTCTTCAGATTCATCTAATCAAACTCTATTAGCTGGCACTCCCGGATATGTTGCTCCAGAGTTGGCTTACAGCATCAATATAACAACAAAATGTGATGTTTATAGCTTTGGAGTTGTGAGTTTGGAGACAATAATGGGGGAACATCCTAAGGAACTGCTTTCCAATATGTCAAAACCATCTGCTCCAAATATCATGCTCAAAGATATATTGGATGCACGTATCCCATTGCCCTTTCTTAGAAAAGACATGAGGGATATTGTGCTGGTTGTGACATTAGCATTAGCATGCTTGCATCCCAACCCAAAATTAAGACCTTCAATGCAGGACATAGCTAATGAGCTTTTGTTTTCAAAGTCGCCATTGCTATGGCATTTTGATGGTATTTCAATTCAGCAACTTGTGAATCAAGAAATATATGCAGTAGATTGGAATCATCTCAGATACCCTAATTTCACTGACAAGTTTCAACTTTTGCAGATGAAGATTCAAGATCCTACTTCCAAGAAGGCCAATGCTAACATAATCTACTACCCTCTAAGTGGTCAATGTGTAAAAGTGAATCACAAGAATGAACTTGAGCTTGGTACCTGTGAGAAGAATCACCACCATAGATGGATCCAATACAATAAAGCCTCCCAAATAATTCTGCATGGCACCAATAAGTGCTTGACATCTTCAGGTGAAGGTCTTCCAGTAACTGTTTCAGATGATTGCAAGAACAAGAAGAATAATTCTTGGAGAAAAGTGTCACTTTCCAAGCTTCATTTGGCCACATTTGATCACAAGAGTGGCAAAACCCTTTGCTTGCAAAAGGATCCTAACTCATCAACCATTGTGACATCAAAATGTACTTGCATAACAGATGATTCTCAATGTCTTGATGATCCTCAAAGCCAGTGGTTCCAGCTTGTTCCCACCAATGTGTAG 2481 0.3926 MVVASNSSSLNEEQEAFLHSGWTEGRDISKHCNWTGIVCNEAGRVTEISTGRYFVIPPSELRNFNFTAFTNLIRLELSGLGLKGIIPSEISSVTKLTYLDLSSNHLEGELPASMSNLTQLSYFNVSNNFLSGVIPSSFNHLKYLKCLSLGSNHIQGPIPIELGHLVHLEVLDLSHNKVSGVIPSGIGQLSRLSTLDISNNNLEGPIPSGILNHCRVVQLSNNSLSGFIPSQIGNLSSLDLSYNNLSGNIPEGLHSVPNLNLSYNSFVLDQSYCHFPKDSLIGNKISGPPCSSTLDDDYLPLPVIILGSIINGMLISLVFVCWGIHVFCPYEFKYEEKGKNGDIFSIWNYDGNIAFEDIIKATEDFDMRYCIGTGAYGSVYKAKLPSGKSVALKKLHRTESENPSFYKSFNNEIKVLSEIRHRNIIRLYGYCLHNECMFLIYEYMEKGSLFYNLAIDEEAKELNWTKRVNIIKGTAFALTHMHHHCTPPIVHRDVTSTNVLLSSNLEACLSDFGTAKLLSSDSSNQTLLAGTPGYVAPELAYSINITTKCDVYSFGVVSLETIMGEHPKELLSNMSKPSAPNIMLKDILDARIPLPFLRKDMRDIVLVVTLALACLHPNPKLRPSMQDIANELLFSKSPLLWHFDGISIQQLVNQEIYAVDWNHLRYPNFTDKFQLLQMKIQDPTSKKANANIIYYPLSGQCVKVNHKNELELGTCEKNHHHRWIQYNKASQIILHGTNKCLTSSGEGLPVTVSDDCKNKKNNSWRKVSLSKLHLATFDHKSGKTLCLQKDPNSSTIVTSKCTCITDDSQCLDDPQSQWFQLVPTNV 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182035g00006 826 Gene3D Transferase(Phosphotransferase) domain 1 444 638 - -
Stsc182035g00006 826 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515
Stsc182035g00006 826 Gene3D Phosphorylase Kinase; domain 1 332 443 - -
Stsc182035g00006 826 Gene3D - 688 809 - -
Stsc182035g00006 826 Pfam Protein kinase domain 371 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182035g00006 826 ProSitePatterns Tyrosine protein kinases specific active-site signature. 489 501 IPR008266 GO:0004672|GO:0006468
Stsc182035g00006 826 FunFam Leucine-rich repeat receptor-like protein kinase 444 639 - -
Stsc182035g00006 826 Gene3D Ribonuclease Inhibitor 156 284 IPR032675 -
Stsc182035g00006 826 PANTHER LEUCINE RICH REPEAT KINASE 2 208 636 - -
Stsc182035g00006 826 SUPERFAMILY Ricin B-like lectins 692 802 IPR035992 -
Stsc182035g00006 826 FunFam Leucine-rich repeat receptor protein kinase MSP1 330 443 - -
Stsc182035g00006 826 SMART LRR_typ_2 232 255 IPR003591 -
Stsc182035g00006 826 SMART LRR_typ_2 189 213 IPR003591 -
Stsc182035g00006 826 SMART LRR_typ_2 117 140 IPR003591 -
Stsc182035g00006 826 SMART LRR_typ_2 93 116 IPR003591 -
Stsc182035g00006 826 SMART LRR_typ_2 165 188 IPR003591 -
Stsc182035g00006 826 ProSiteProfiles Leucine-rich repeat profile. 234 256 IPR001611 GO:0005515
Stsc182035g00006 826 FunFam Leucine-rich repeat receptor protein kinase EMS1 159 237 - -
Stsc182035g00006 826 Gene3D Ribonuclease Inhibitor 4 155 IPR032675 -
Stsc182035g00006 826 SUPERFAMILY Protein kinase-like (PK-like) 349 635 IPR011009 -
Stsc182035g00006 826 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Stsc182035g00006 826 PRINTS Leucine-rich repeat signature 189 202 - -
Stsc182035g00006 826 PRINTS Leucine-rich repeat signature 168 181 - -
Stsc182035g00006 826 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Stsc182035g00006 826 SUPERFAMILY L domain-like 31 268 - -
Stsc182035g00006 826 ProSiteProfiles Protein kinase domain profile. 365 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182035g00006 826 FunFam Nuclear pore complex protein NUP107 3 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182035g00006 Stsc-Chr182035 20906 24141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182035g00006 65 537 Receptor kinase-like Gene Family AT4G08850 41.683 1.30e-104 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc182035g00006 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182035g00006 - - vra:106773464 865.529