Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182035g00004 ATGGCTATATACATTTCAATTTTGATTATATTAATCCAACTTCTCTTGTGTGCCTCCATCAATTCCTATACCATCAAACCTCCTGGAACTCATAGGAATTCAACATCCAAACTGTCACAGTTGGATGAAGAAGCCTATGCTTTGTTTTCTCTTCACTGGTGGAGTATCCAATACAATATCTCGAACCGTTGCAACAATTGGCCCGGTGTTGAGTGCAACAACAACGGAAGCATTACAAAGCTTTCACCACCAAAGGTTTCCACCTATGTCTTTAAAAGAGACCTCTATGTTAGGGACATCAATTTCTCAGTCTTCTCAAATCTTGTCCACCTTGATCTCAGTCAAATGGATCTATATGAACTCCCAATGGGACTAACTGGTCTCAAGAAGCTAACACTACTCAATCTGTCCTATAACAATCTCCAAGATGAAATCCCTTTCTCATTGGCAAATTTCCCTCAACTGATGGTGTTTGATGTCTCTAACAACCTTATTACTGGTCAGATTCCACATGAAATTAGCAAGCTGGAGAATCTTGTCACACTGGACTTGAGTTTCAACATGTTCAGTGGAACAATTCCACTGAGTTTGAGTCATGTGACTAGTCTCAACCACTTGATGATATCCAATAACAGACTAGATGGTGAGCTTCCTACAAAGTTTCTAAATCTTTCTCAGTTGAAGACTTTTGACCTTTCTCGCAATCGTCTTCTAGGTAAGCTCCCTGCAACATTTGTAAATAACTCCCAGTTAGAGAATCTAAACCTTTCTGACAATCGAATAGGCGGTTTCATCCCTTGCGAAATAGGGAAGTTGGAAAATCTTGTAGTTTTAGACCTGAGTTTGAATCAGCTAGCAGGTCCAATTCCTGAGCAAATAGGGTGTCTAAAAAATTTGACAAGTCTCCACCTTGATTCAAATTGGATTAATGGTACTATACCTTCAAGTATAGGACTTTTAGTCCATTTGAATGAGTTAACAATTGGATTCAACCAAATACATGGGTTGATTCCTGCTGAATTAGAGCAATTGGTTCATCTGAAAGTTTTGGATATTTCAAATAATGAAATTTCTGGTGGTATACCAAAATGGATATCTGCATTGACACAATTAACAGGTATAAGACTTCAGGGGAACCAGCTTAGTGGTGTTATCCCATATGGTATCCTCAATCATAGTATTCATGTGGATCTTAGCCGCAACCATTTGAATGGAAGCATTCCTTCTCAAATTGGCCATTATCTTTTATATCTAGACCTTAATGGCAATAACTTGAGTGGCAAGAAACCAAAGGAGCTTGATTCTGTTCCATTCTGCTATCTATATTGCAATCCCCTTCTTGATGATGGATATTATGACTGCAGTGATTCACAAGATCAATTAGATTATGACCATCATGATAACCATTTTAGGCCATCAATGGTTTTGGTTTTAATAATTGTGGCCAGTGTTCTCATTTCTTTCGGCTGCATAGCGGTTGGAATTTGTGTTCTTCGGTCCAGGCATCGTCACAAACTCAAAAATAAGGCAGAAAAGCATGGAGATTTGTTCTCAATTTGGAACTATGATGGTAAAATTGCATTTGAGGACATCATTGAAGTGACGGAGGACTTTGATATCAGATATTGCATTGGAGCCGGCACTTATGGTAGTGTCTACAAAGCTCAACTTCCAAGTGGAAAAACTGTTGCATTGAAGAAGCTTCACAAAACAGAATCAGAAAATCCATCATTTTACAAGAGCTTCTGCAATGAAGTTGAGGTCTTGACAGAGATTCGCCACCGCAACATCATAAGGCTTTATGGCTATTGTATGCATAACAGATGCATGTTTTTGGTGTATGAGTATTTGGAAAGAGGAAGCTTGTTCTATAACTTGGCCAATGAGATGGAAGCTAAAGAGTTGAATTGGAGAAAGAGGGTGAAGATCATTAAAGGGACAGCATTTGCTCTTGCTTACATGCATCATCATTGTACTCCTCCTATTGTTCATAGAGATATCAGCAGCAACAATATTTTGCTGAACTCAGAGTTAGAAGCTTGTGTATCAGATTTCGGCACAGCAAGACTTCTTGATCCCGATTCATCTAATCAAACTCTTCTAGTTGGCACCTATGGATATGTTGCTCCAGAATTGGCATACACCATGAGTGTGACTACAAAATGTGATGTGTATAGTTTTGGAGTGGTGGCTTTAGAAACAATGATGGGGCATCATCCGGGAGAACTCAGTTCCACTGTGTCAAAGGCATGCACTCAACAATTATTGGTGAAAGATTTGTTGGATCCAAGGATTCCAGTTCCAAGTTGTGGGAAAGATATGCAAGATGTTGTACTTGTTCTGAAGTTAGCATTAGCATGCCTCTCCTTAGACCCAAAAACCAGACCATCAATGCAGGATGTGGCCAATGAGTTTTTGGCTTCTAAGGCACCAATACAGATCCCTTTCTCTGATGTTTCAGTCTACCATTTGATGAATCAAGAAATATATGCCATTGATAAAAATTAG 2508 0.39 MAIYISILIILIQLLLCASINSYTIKPPGTHRNSTSKLSQLDEEAYALFSLHWWSIQYNISNRCNNWPGVECNNNGSITKLSPPKVSTYVFKRDLYVRDINFSVFSNLVHLDLSQMDLYELPMGLTGLKKLTLLNLSYNNLQDEIPFSLANFPQLMVFDVSNNLITGQIPHEISKLENLVTLDLSFNMFSGTIPLSLSHVTSLNHLMISNNRLDGELPTKFLNLSQLKTFDLSRNRLLGKLPATFVNNSQLENLNLSDNRIGGFIPCEIGKLENLVVLDLSLNQLAGPIPEQIGCLKNLTSLHLDSNWINGTIPSSIGLLVHLNELTIGFNQIHGLIPAELEQLVHLKVLDISNNEISGGIPKWISALTQLTGIRLQGNQLSGVIPYGILNHSIHVDLSRNHLNGSIPSQIGHYLLYLDLNGNNLSGKKPKELDSVPFCYLYCNPLLDDGYYDCSDSQDQLDYDHHDNHFRPSMVLVLIIVASVLISFGCIAVGICVLRSRHRHKLKNKAEKHGDLFSIWNYDGKIAFEDIIEVTEDFDIRYCIGAGTYGSVYKAQLPSGKTVALKKLHKTESENPSFYKSFCNEVEVLTEIRHRNIIRLYGYCMHNRCMFLVYEYLERGSLFYNLANEMEAKELNWRKRVKIIKGTAFALAYMHHHCTPPIVHRDISSNNILLNSELEACVSDFGTARLLDPDSSNQTLLVGTYGYVAPELAYTMSVTTKCDVYSFGVVALETMMGHHPGELSSTVSKACTQQLLVKDLLDPRIPVPSCGKDMQDVVLVLKLALACLSLDPKTRPSMQDVANEFLASKAPIQIPFSDVSVYHLMNQEIYAIDKN 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182035g00004 835 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 223 807 - -
Stsc182035g00004 835 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 220 438 - -
Stsc182035g00004 835 ProSitePatterns Tyrosine protein kinases specific active-site signature. 662 674 IPR008266 GO:0004672|GO:0006468
Stsc182035g00004 835 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515
Stsc182035g00004 835 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Stsc182035g00004 835 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Stsc182035g00004 835 Gene3D Ribonuclease Inhibitor 288 390 IPR032675 -
Stsc182035g00004 835 Pfam Protein kinase domain 543 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182035g00004 835 Gene3D Phosphorylase Kinase; domain 1 498 616 - -
Stsc182035g00004 835 Gene3D Ribonuclease Inhibitor 391 448 IPR032675 -
Stsc182035g00004 835 ProSiteProfiles Protein kinase domain profile. 538 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182035g00004 835 SMART LRR_typ_2 296 320 IPR003591 -
Stsc182035g00004 835 SMART LRR_typ_2 176 200 IPR003591 -
Stsc182035g00004 835 SMART LRR_typ_2 224 247 IPR003591 -
Stsc182035g00004 835 SMART LRR_typ_2 344 368 IPR003591 -
Stsc182035g00004 835 SMART LRR_typ_2 128 149 IPR003591 -
Stsc182035g00004 835 SMART LRR_typ_2 272 295 IPR003591 -
Stsc182035g00004 835 SUPERFAMILY L domain-like 66 430 - -
Stsc182035g00004 835 FunFam MDIS1-interacting receptor like kinase 2 617 811 - -
Stsc182035g00004 835 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 101 193 - -
Stsc182035g00004 835 Gene3D Transferase(Phosphotransferase) domain 1 617 814 - -
Stsc182035g00004 835 Gene3D Ribonuclease Inhibitor 39 192 IPR032675 -
Stsc182035g00004 835 Gene3D Ribonuclease Inhibitor 193 287 IPR032675 -
Stsc182035g00004 835 FunFam Leucine-rich repeat receptor protein kinase MSP1 501 616 - -
Stsc182035g00004 835 SUPERFAMILY Protein kinase-like (PK-like) 524 803 IPR011009 -
Stsc182035g00004 835 ProSitePatterns Protein kinases ATP-binding region signature. 544 566 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182035g00004 Stsc-Chr182035 13686 16382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182035g00004 95 710 Receptor kinase-like Gene Family AT4G08850 37.559 1.55e-119 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc182035g00004 Pkinase 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182035g00004 - - aip:110269304 1211.82