Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182035g00003 ATGCTTATACCCACTTCCATTTTGATATCATTCCTTGTTGTTCTCTTTCCCATCACTGAAGCCAAAGTGTCACATTTAGATGAAGAAGCTCATGCTTTACTTTTGACTGGTTGGTGGAGTAACCAACAAAATATCTCAAACCGTTGCAACTGGTCTGGTATTCACTGCAACTATGCCGGAAGCATCACAGAGATTACTTCACCTCCAAGGAACAATTATGACAGCTCTCTCGGCGTCGATTTTTCAGTCTTTTCGAATCTTGTCCACCTTGATCTCAGCGGTATGGAGTTGTACGGATTCCCAAAGGGACTAAATGATCTCAAGAAACTGAAATTTCTGAACCTATCTCATAACAACCTTAAAGATGAAACAGGTTCTCTTTCTTCATTGGCAAATCTAACTCAACTTCTTGTGCTAGATCTTTCTTACAATAACATTGGTAGTCAAATTCCAAATGAATTCAGCATGCTAGAGAGGCTTGTCAAATTAGATTTGAGTACAAATTTGTTCAGTGGAAGCATTCCATTAGTCTTGAGTCATATGTCCAATCTCATCTACATGAACCTTTCTTCCAATCAACTAATTGGTGATCTTCCTACTACAGTTTTTGCAAATCTTACCAAGTTAGAGACTCTTGATCTTTCCCTAAACAGATTTAGTGGTCTCATCCCTCAAGAAATAGGGAATTTAACAAACTTGTTGACCTTAGACCTCAGTTCAAACAACTTGGTTGGTCCAATTCCTGACCAAATTGGGTACTTGAACAATTTGACAAGTCTCAACCTTAATTCAAATTCCATTAATGGTTCTATACCTTCAAGTACAGGACTTTTATCCCGTTTGGAAGTGTTGACTATTAAAGACAACCAAGTAGGTGGGTTAATCCCAAATGAATTAGAGAACTTGGTTCATCTTAAAGCTTTAGATCTTTCATATAATGGTATTTTGGGTGTTATACCAAAATGGATATCTAACCTGACAGAATTAGATGACATAAGACTTTCAGGGAATCAAATCAGTGGCTATGTCCCATCTACTATACTTGTTCATATCAGTCATGTGGATCTCAGCACAAACAAGTTAATTGGAAATGTTCCTTTTCAGATCAGCAATGTTTCATATCTAGATGTTAGCTACAACAACCTTTCTGGTCCAATTCCTGAGCAAATAGGGTACTCGAATCGGTTGACAGTTCTCCACCTTGATTCAAATTTCTTCAATGGTTCTATACCTTCAAGTATAGGACTTCTAACAGAAATGGAAATGCTCACCATGGCACACAACAAGATAGATGGTTCTATCCCTATAGAAATGGAGCATTTGTTCCATTTAAAAGGTTTGGATCTTTCTTGGAATAGATTTTCTGGTGTTATCCCATCCGGTCTCTTTGTTCACCCTACACTTGTGGATCTGAGCGGTAACAATTTAAGTGGAAGCATTCCTTCAATAATTGGCAAAAATCTTTCAATTTTAGGCCTCAGTTACAACAATTTCAGTGGCAACATACCTAAGGGGCTAGATTCAGTGCAATTCTACAATTTAGAGTGCAATCCGTTTCTAAATGGAGATTACCACTATTGTCAAACACAGCAAAATCAATCAGAATACCATAAGAATAATCATAATAAAGGTTTAAGTACTTTGGTTTTGGTTTTGATAATTGTGGCCAGTGTTCTTTTTTCTTTTGGCTCCATAGGGATTGGAATTTGTGTTCTATTTGCCAGGCATCGCCGTCGAAAACTTAAGGTTATGACAGAAAAGCATGGAGACTTGTTTTCAATTTGGAACTATGATGGTAAAATTGCATTTGAGGACATTGTTGAAGCTACAGAAGACTTCCATATCAGATATTGCATTGGAACTGGTGCTTATGGTAGTGTCTACAAAGCAGAACTTCCAAGCGGCAAAACCATTGCTTTGAAGAAGCTTCACAAAACAGAATCTGAAAATCCAGCTTTTTACAAGAGCTTCTGCAATGAAGTTAAGGTCTTGACAGAGATTCGCCACCGCAACATCATAAGGCTTTATGGCTATTGTTTGCATAACAGATGCATGTTTTTGGTGTATGAGTACTTGGAAAGAGGAAGCTTGTTTTATAACTTGGCGAATGAGATTGAAGCTCAAGAGTTGAATTGGAGAAGGAGGGTGAAGATCATTAAAGAGACAGCATTTGCTCTTGCTTACATGCATCATCATTGCACTCCTCCTATTGTTCATAGAGATGTTACCTCTAGCAATATACTGCTGAATTCGGATTTGGAAGCTTGTGTATCAGATTTTGGCACTGCAAGACTTCTGGATACTGATTCATCTAATCATACTCTTCTAGTTGGAACTTACGGATATCTTGCTCCAGAATTGGCTTACACCATGAATGTGACTACAAAATGTGATGTGTTTAGTTTCGGAGTGGTGGCATTAGAAACAATGATGGGGCATCATCCAGGAGAATTTGTTTCCTCTTTGTCAAATCCATTTACTCAAAACTTGTTGGTTAACCAAGTACTGGATTCTCGAATTCCGCTCCCGAATCTTAAGGAAGACATGCAAGATGTTGTGCTTGTTATGACACTAGCATTGGCATGCCTCTCTTCAGATCCAAAATCAAGACCATCAATGGAAGATGTGGCTAATGGGTTTTTCGCTTCTAAGGCACCAATAAATTTCTGTTTCTCTGATATCTCAGTCTACCAATTGATGAATCAAGAAATATATGTCATTGATAAAAATTAG 2733 0.378 MLIPTSILISFLVVLFPITEAKVSHLDEEAHALLLTGWWSNQQNISNRCNWSGIHCNYAGSITEITSPPRNNYDSSLGVDFSVFSNLVHLDLSGMELYGFPKGLNDLKKLKFLNLSHNNLKDETGSLSSLANLTQLLVLDLSYNNIGSQIPNEFSMLERLVKLDLSTNLFSGSIPLVLSHMSNLIYMNLSSNQLIGDLPTTVFANLTKLETLDLSLNRFSGLIPQEIGNLTNLLTLDLSSNNLVGPIPDQIGYLNNLTSLNLNSNSINGSIPSSTGLLSRLEVLTIKDNQVGGLIPNELENLVHLKALDLSYNGILGVIPKWISNLTELDDIRLSGNQISGYVPSTILVHISHVDLSTNKLIGNVPFQISNVSYLDVSYNNLSGPIPEQIGYSNRLTVLHLDSNFFNGSIPSSIGLLTEMEMLTMAHNKIDGSIPIEMEHLFHLKGLDLSWNRFSGVIPSGLFVHPTLVDLSGNNLSGSIPSIIGKNLSILGLSYNNFSGNIPKGLDSVQFYNLECNPFLNGDYHYCQTQQNQSEYHKNNHNKGLSTLVLVLIIVASVLFSFGSIGIGICVLFARHRRRKLKVMTEKHGDLFSIWNYDGKIAFEDIVEATEDFHIRYCIGTGAYGSVYKAELPSGKTIALKKLHKTESENPAFYKSFCNEVKVLTEIRHRNIIRLYGYCLHNRCMFLVYEYLERGSLFYNLANEIEAQELNWRRRVKIIKETAFALAYMHHHCTPPIVHRDVTSSNILLNSDLEACVSDFGTARLLDTDSSNHTLLVGTYGYLAPELAYTMNVTTKCDVFSFGVVALETMMGHHPGEFVSSLSNPFTQNLLVNQVLDSRIPLPNLKEDMQDVVLVMTLALACLSSDPKSRPSMEDVANGFFASKAPINFCFSDISVYQLMNQEIYVIDKN 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182035g00003 910 ProSiteProfiles Leucine-rich repeat profile. 109 131 IPR001611 GO:0005515
Stsc182035g00003 910 Pfam Leucine rich repeat 183 243 IPR001611 GO:0005515
Stsc182035g00003 910 Pfam Leucine rich repeat 279 339 IPR001611 GO:0005515
Stsc182035g00003 910 Gene3D Phosphorylase Kinase; domain 1 575 691 - -
Stsc182035g00003 910 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Stsc182035g00003 910 Gene3D Ribonuclease Inhibitor 127 200 IPR032675 -
Stsc182035g00003 910 SUPERFAMILY L domain-like 278 547 - -
Stsc182035g00003 910 SMART LRR_typ_2 254 278 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 326 350 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 302 325 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 157 180 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 107 130 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 206 229 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 230 252 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 133 156 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 441 465 IPR003591 -
Stsc182035g00003 910 SMART LRR_typ_2 181 205 IPR003591 -
Stsc182035g00003 910 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 124 350 - -
Stsc182035g00003 910 Pfam Protein kinase domain 617 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182035g00003 910 Gene3D Ribonuclease Inhibitor 201 282 IPR032675 -
Stsc182035g00003 910 ProSiteProfiles Protein kinase domain profile. 613 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182035g00003 910 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Stsc182035g00003 910 SUPERFAMILY Protein kinase-like (PK-like) 600 878 IPR011009 -
Stsc182035g00003 910 Gene3D Transferase(Phosphotransferase) domain 1 692 885 - -
Stsc182035g00003 910 SUPERFAMILY L domain-like 46 366 - -
Stsc182035g00003 910 FunFam Leucine-rich repeat receptor protein kinase MSP1 576 691 - -
Stsc182035g00003 910 FunFam MDIS1-interacting receptor like kinase 2 692 886 - -
Stsc182035g00003 910 PANTHER LEUCINE RICH REPEAT KINASE 2 204 884 - -
Stsc182035g00003 910 Gene3D Ribonuclease Inhibitor 22 126 IPR032675 -
Stsc182035g00003 910 Gene3D Ribonuclease Inhibitor 283 348 IPR032675 -
Stsc182035g00003 910 PRINTS Leucine-rich repeat signature 209 222 - -
Stsc182035g00003 910 PRINTS Leucine-rich repeat signature 230 243 - -
Stsc182035g00003 910 Gene3D Ribonuclease Inhibitor 349 552 IPR032675 -
Stsc182035g00003 910 ProSiteProfiles Leucine-rich repeat profile. 256 278 IPR001611 GO:0005515
Stsc182035g00003 910 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 366 458 - -
Stsc182035g00003 910 ProSitePatterns Tyrosine protein kinases specific active-site signature. 737 749 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182035g00003 Stsc-Chr182035 8807 11633 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182035g00003 23 785 Receptor kinase-like Gene Family AT4G08850 34.825 2.85e-135 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc182035g00003 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182035g00003 - - adu:107475518 1449.49