Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182028g00002 ATGAATGAATTTCTCCCGCACTTTGAGGATGGACGGGTTAAACTACTCATAGTAGTGTGCCAGTGTTTCAAGGCCGATAGAATGATACGAATCGATTTATTACAATGCTGGGCTGCAAGAGACACCTCTGGCTATCTCTCTCCCTTTCATTTCACAAGAAGGGAAAATGAAGCAGATGACGTGACTCTGAAAATCCTCTACTGCGGGGTTTGCCATACCGATCTCCACACAATCAAGAACGAATGGGGTGTCACTAATTATCCCGTTGTCCCTGGGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGAAGTAACGTGACAAAATTTATGAAGGGTGATAGAGTTGGAGTTGGTGTAATGGTGGACTCATGTAAGGAATGCGAGTGTTGCCAGCACGATATGGAGAATCACTGTCCTCAACATATCTTCACCTATAACTCTCCTCACAAAGGGACAACAACCCGTGGTGGCTACTCCGATTTCGTCGTTGTTCACCAGCGCTATGTGCTTCATTTTCCCTACAACCTACCCCTTGATGCTGGTGCCCCTCTTCTCTGTGCTGGAATCACTGTGCATAGTCCTATGATGTATTATGGGATGACAGAGCCAGGCAAACATTTTGGAGTGGCCGGGCTCGGTGGCTTAGGCCACGTTGCCATCAAATTTGGCAAAGCATTTGGTCTCAAAGTTACTGTCATTAGTAGCTCTCCCAGCAAGGAATCTGAAGCCATTGATGTTCTCGGGGCTGATTCTTTCCTTCTTTCCTCTGATCCTGAAAAGATGAAGGCTGCTACAGGAACGATGGATTATATCATTGACACTATTTCTGCTGTTCATCCGCTGGGTCCCCTGCTTGATCTGCTGAAGGTGAACGGAAAGTTGGCTTTTGTGGCGCTGCCTGGCGACCCTCTTCAGCTGCCTGTGTTTCCCTTGGTTGGAAGAAGGAAGTTTATAGGGGGAAGCTACTTTGGAGGGATTAAGGAGACTCAGGATATGCTTGATTTTTGTGGAAAGCATAACATAACTGCAAATATTGAGTTGATTAAGATGGATGAGATCAACACTGCTGTGGAAAGGCTCAGCAAAGCTGATGTTAAATATCGGTTTGTCATTGATATTCAAAATCCTTATCCTCGAGTAACATTTAGAAGAAGCTTCTTTCAACACTTTCATGTCTCAACTTTATTAAGTCAGGTGTCCCAGTATTTTGTGGACGTAGAATAA 1224 0.4469 MNEFLPHFEDGRVKLLIVVCQCFKADRMIRIDLLQCWAARDTSGYLSPFHFTRRENEADDVTLKILYCGVCHTDLHTIKNEWGVTNYPVVPGHEIVGVVTKVGSNVTKFMKGDRVGVGVMVDSCKECECCQHDMENHCPQHIFTYNSPHKGTTTRGGYSDFVVVHQRYVLHFPYNLPLDAGAPLLCAGITVHSPMMYYGMTEPGKHFGVAGLGGLGHVAIKFGKAFGLKVTVISSSPSKESEAIDVLGADSFLLSSDPEKMKAATGTMDYIIDTISAVHPLGPLLDLLKVNGKLAFVALPGDPLQLPVFPLVGRRKFIGGSYFGGIKETQDMLDFCGKHNITANIELIKMDEINTAVERLSKADVKYRFVIDIQNPYPRVTFRRSFFQHFHVSTLLSQVSQYFVDVE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182028g00002 407 Gene3D - 187 343 - -
Stsc182028g00002 407 FunFam Putative cinnamyl alcohol dehydrogenase 6 344 373 - -
Stsc182028g00002 407 Gene3D - 37 373 - -
Stsc182028g00002 407 Pfam Zinc-binding dehydrogenase 214 335 IPR013149 -
Stsc182028g00002 407 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 341 IPR036291 -
Stsc182028g00002 407 SUPERFAMILY GroES-like 41 205 IPR011032 -
Stsc182028g00002 407 FunFam Cinnamyl alcohol dehydrogenase 187 343 - -
Stsc182028g00002 407 SMART PKS_ER_names_mod 44 371 IPR020843 GO:0016491
Stsc182028g00002 407 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 92 106 IPR002328 GO:0008270|GO:0016491
Stsc182028g00002 407 PANTHER ALDEHYDE REDUCTASE 36 375 IPR047109 GO:0016616
Stsc182028g00002 407 Pfam Alcohol dehydrogenase GroES-like domain 59 170 IPR013154 -
Stsc182028g00002 407 FunFam probable cinnamyl alcohol dehydrogenase 37 198 - -
Stsc182028g00002 407 CDD CAD1 35 372 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182028g00002 Stsc-Chr182028 8768 13051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182028g00002 37 375 Monolignol Biosynthesis Gene Families AT2G21730 66.082 8.34e-164 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182028g00002 K00083 - gmx:100819684 543.502