Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182014g00002 ATGGATGCTAACAAAATTATTAAGAAAAGTGAAGAAGCAAACGAGATGGGCCTAAGAAAAGGTCCATGGACGCTTGACGAGGACACCATTCTCATCAATTACATCTCCACACACGGTGAGGGTCACTGGAATTCCCTCGCACGTTCTGCAGGTTTGAAGAGAAGCGGTAAAAGTTGTAGATTAAGGTGGCTAAACTACTTGCGCCCCGACGTGCGCCGTGGAAATATCACACTCCAAGAACAGATATTGATTCTTGACCTCCACTCTCGCTGGGGTAATAGGTGGTCAAAGATTGCTCAGCATCTGCCCGGAAGAACGGACAACGAAATCAAGAACTATTGGAGGACGAGGGTGATAAAGCAGGCAAAGCAGTTAAAGTGCGATGTGAACAGCAAGCAGTTCAGAGACGCCTTGCGTTACGTCTGGATGCCCCGATTGCTCGAGAGGCTCCACCCTCAAACCGGACTTCTTCTTCCCAACAACCAAAACGGTTCAAATTCGAGACCCTTAATAAAACGCAGCGGTGGTGGTGGTGCTTCCTTATCGGACTCGTCGAACGACGGGGGAGATTCGTCAGAACCGTTGGGACAGAGTGTTGGAAATCAATTGTCAAGTTTCAATAATAACTTGTTGTTTGAACAGGGGACAAATGGTGGTTGTGGTGGTGGTGAGTCACTGGAGAGTTTGTGGAACGATGAGAATATGTGGTTTTTGCAACAACAACTTTTTTCCGATGATCTTGAAGTGAAATTGAATTCCCTTGCGTGA 768 0.4688 MDANKIIKKSEEANEMGLRKGPWTLDEDTILINYISTHGEGHWNSLARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDALRYVWMPRLLERLHPQTGLLLPNNQNGSNSRPLIKRSGGGGASLSDSSNDGGDSSEPLGQSVGNQLSSFNNNLLFEQGTNGGCGGGESLESLWNDENMWFLQQQLFSDDLEVKLNSLA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182014g00002 255 MobiDBLite consensus disorder prediction 178 199 - -
Stsc182014g00002 255 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Stsc182014g00002 255 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Stsc182014g00002 255 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 161 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc182014g00002 255 FunFam MYB transcription factor 77 140 - -
Stsc182014g00002 255 CDD SANT 77 116 IPR001005 -
Stsc182014g00002 255 Gene3D - 20 72 - -
Stsc182014g00002 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Stsc182014g00002 255 CDD SANT 22 67 IPR001005 -
Stsc182014g00002 255 SMART sant 19 69 IPR001005 -
Stsc182014g00002 255 SMART sant 72 120 IPR001005 -
Stsc182014g00002 255 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Stsc182014g00002 255 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Stsc182014g00002 255 Gene3D - 77 118 - -
Stsc182014g00002 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Stsc182014g00002 255 MobiDBLite consensus disorder prediction 157 199 - -
Stsc182014g00002 255 FunFam Myb transcription factor 20 72 - -
Stsc182014g00002 255 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182014g00002 Stsc-Chr182014 25015 26241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182014g00002 18 239 MYB Transcription Factor Family AT1G48000 55.507 1.51e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc182014g00002 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182014g00002 K09422 - gmx:778065 311.227