Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182014g00001 ATGGAAATGGAGTACACAAGCGGTAGTGTTGATCACATGATGATGATGAGAAGCTTATCAGATTGTGGCTCTTCAGTGACAAATTGTAGCGAGGAAGATATGGAAATTAGAAAAGGTCCATGGACAGAGGAAGAGGATTCTGCTCTGCTCAACCATATCACCACCTATGGTGAAGGACACTGGAACTCTGTTGCACGCTCTGCAGGTCTAAAGAGAACCGGAAAGAGCTGCAGATTAAGATGGTTAAATTACTTGCGTCCGAATGTTAGACGAGGGAACATCAGCCTGGAAGAACAGCTCTTGATTCTTGACCTGCATTCACGCTGGGGCAACAGGTGGTCAAAGATAGCAGAACAATTGCCAGGAAGAACAGACAACGAGATCAAGAACTACTGGAGAACGAGAGTGGTGAAGCAGGCGAAGCAACTGAAATGCGATGTAAACAGCAAACAGTTCAGAGACGCGTTGCGCTACGTATGGATGCCACGCCTTGTGGAGCAGATTCAAGCCCAAGCAAAATCAATTTCCATCGCTTCATTATCTAACTCTTGTTCTTCATCGTCTGGATTTCAACATGTCCAGCAGGGGTCTTCAATCTCTGATTCTTGTGTGTCTTATTACAGTTTAATCGATAGTAGTAGTGGTGGTGGTGGTGGTGAGAAGGGAGCCACGTCATCATCGACGACGCCATTGTTGAAGGAGAAAATGGAGTGTACGGAGATTCAGTTAGCATTGGAGGCGGATAATGGTTTGGGCGGTGCTGATTTGTGGACTGATGAAAACATTTGGTTCTTGCAGCAGCAACTTGCTGATGATGATGATCTCCTGTGA 831 0.4585 MEMEYTSGSVDHMMMMRSLSDCGSSVTNCSEEDMEIRKGPWTEEEDSALLNHITTYGEGHWNSVARSAGLKRTGKSCRLRWLNYLRPNVRRGNISLEEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDALRYVWMPRLVEQIQAQAKSISIASLSNSCSSSSGFQHVQQGSSISDSCVSYYSLIDSSSGGGGGEKGATSSSTTPLLKEKMECTEIQLALEADNGLGGADLWTDENIWFLQQQLADDDDLL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182014g00001 276 CDD SANT 95 134 IPR001005 -
Stsc182014g00001 276 Gene3D - 38 90 - -
Stsc182014g00001 276 SMART sant 37 87 IPR001005 -
Stsc182014g00001 276 SMART sant 90 138 IPR001005 -
Stsc182014g00001 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 89 IPR017930 -
Stsc182014g00001 276 CDD SANT 40 85 IPR001005 -
Stsc182014g00001 276 Gene3D - 95 136 - -
Stsc182014g00001 276 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Stsc182014g00001 276 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Stsc182014g00001 276 SUPERFAMILY Homeodomain-like 35 132 IPR009057 -
Stsc182014g00001 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Stsc182014g00001 276 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Stsc182014g00001 276 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 32 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc182014g00001 276 FunFam Myb transcription factor 38 90 - -
Stsc182014g00001 276 FunFam MYB transcription factor 95 158 - -
Stsc182014g00001 276 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182014g00001 Stsc-Chr182014 17091 18279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182014g00001 31 272 MYB Transcription Factor Family AT2G47190 50.196 4.54e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc182014g00001 Myb_DNA-binding 5.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182014g00001 K09422 - gmx:100777932 296.204