Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182007g00005 ATGTCGCAGGAGCTGAAGGCCAAGCCTCAGAATTTCAAACCTAGCTCAGTGGCATCGTGGGAGAATGGCACGCCTGTGCCGTTCTCGTTACTGGCGTCGGCGCTTGACATGATTTATAAGGAGTCTGGGAGAATCGGGAGAACATATATTGCTTACAATTTGATGCAAACTGTGATATACTCTACCCCCGAGGATCTTCTGCCTCTGATGTATCTCTTGGGCATGAAAAAGAATGTTTGTTGTTTGCAGGAACTGCGTGATTTGGGATTAGTTGCCAAGAAATGCCGTCCACTTCAGCCTATTTTTGGCAGGCAGCTTGAGCCTCTGACTATTAGGAAGGTTTTCAACACCTTCCGTGATATTGCCAAGAAATCTGGAGAAGCCAGTCTAAGGAAGAAAAGGGATCATATAAAGGAACTTCTTGTTGCTGGAAATGACTGTGAACGTCAATATCTTATCCGTCTTCTGCAGAGAAAGTTGCGGATTGGTATTGCTGATCAAACTCTTTTAGCTGCATTAGCCCAAGCAGCAGTATATACTGAAGAACATTCTAAAGCACCTGCTGATATCAAGTCTCCTGTGGAAGAGGCTGTAAAAATTGTCAAACAAGCCTATTCTGTTGTTCCTGTTTACGACAAAATAGTATCTGCGCTGCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTCACTCCTGACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTACAGTAGAAATGCCGAGCGGAATACTGTGAAGTATCCTGATGTTGTCGCTGCAATTTCAAGGGTAAAGAAATCAACTGTATCATCATTTGTCCTTGATTGTGAAATTGTTGGATATGATCGTGAAAAACAGATGATCCGTTCTTTCCAGGAACTTAGTGGTCGGCCTCGTAAAAATGTATCTATGGATAATATAAAGCATCTTTATGCTTCTTTTGAAGAAGAAGCAGGAGTATTTCAGTATGCAACAGCAATAACAACAAATGACATCGAGGAAATACAGGAATTTCTGGACCAAGCTGTTGCTTCAAGCAGCGAGGGATTAATCATTAAAACATTAGATAAAGATTCTACATATGAACCTTCCAATCGGTCAAACAATTGGCTAAAACTGAAGAAAGATTATCTGAACAACATAGGGGACTCACTAGATTTGTTACCTATAGCCGCATTCCACGGACGTGGGAAACGTACAGATGTGTATGGTGCTTTTCTTGTTGCTTGCTATGACTGCAATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACGGGATTTACTGAAAAAGACCTTAAACAGTGTTTTACTAGTCTTAGTTCTAAAGTGATTCCTGGGCCAAAGTCATACTATCGGTACGGAAATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTTCAGATCTGACCATTAGCCCAGTTCACCGTGCTGCAGTGGGCATAGTAGATTCAGATAAGGGTATATCTCTTAGATTCCCTCGGTTTATTCGAGTTCGACCTGACAAAAAGCCTGAGGAGGCCTCATCATCTGAGTAG 1596 0.416 MSQELKAKPQNFKPSSVASWENGTPVPFSLLASALDMIYKESGRIGRTYIAYNLMQTVIYSTPEDLLPLMYLLGMKKNVCCLQELRDLGLVAKKCRPLQPIFGRQLEPLTIRKVFNTFRDIAKKSGEASLRKKRDHIKELLVAGNDCERQYLIRLLQRKLRIGIADQTLLAALAQAAVYTEEHSKAPADIKSPVEEAVKIVKQAYSVVPVYDKIVSALLTHGVWKLPSTCNFTPDKYDGERAQIHYMENGSVEIYSRNAERNTVKYPDVVAAISRVKKSTVSSFVLDCEIVGYDREKQMIRSFQELSGRPRKNVSMDNIKHLYASFEEEAGVFQYATAITTNDIEEIQEFLDQAVASSSEGLIIKTLDKDSTYEPSNRSNNWLKLKKDYLNNIGDSLDLLPIAAFHGRGKRTDVYGAFLVACYDCNNEEFQSICKIGTGFTEKDLKQCFTSLSSKVIPGPKSYYRYGNKMKPDVWFEASEVWEVKASDLTISPVHRAAVGIVDSDKGISLRFPRFIRVRPDKKPEEASSSE 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182007g00005 531 ProSitePatterns ATP-dependent DNA ligase signature 2. 360 386 IPR016059 GO:0003909
Stsc182007g00005 531 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 236 392 - -
Stsc182007g00005 531 Gene3D - 395 531 IPR012340 -
Stsc182007g00005 531 Gene3D - 78 236 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc182007g00005 531 Gene3D - 2 77 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc182007g00005 531 FunFam DNA ligase 239 327 - -
Stsc182007g00005 531 Gene3D DNA ligase/mRNA capping enzyme 239 323 - -
Stsc182007g00005 531 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 3 73 - -
Stsc182007g00005 531 Pfam DNA ligase N terminus 82 174 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc182007g00005 531 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 9 230 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc182007g00005 531 CDD OBF_DNA_ligase_I 394 531 - -
Stsc182007g00005 531 CDD Adenylation_DNA_ligase_I_Euk 229 389 - -
Stsc182007g00005 531 Gene3D DNA ligase/mRNA capping enzyme 324 388 - -
Stsc182007g00005 531 Pfam ATP dependent DNA ligase domain 235 318 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc182007g00005 531 Pfam ATP dependent DNA ligase domain 320 386 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc182007g00005 531 SUPERFAMILY Nucleic acid-binding proteins 394 530 IPR012340 -
Stsc182007g00005 531 ProSiteProfiles ATP-dependent DNA ligase family profile. 274 424 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc182007g00005 531 Pfam ATP dependent DNA ligase C terminal region 411 522 IPR012309 GO:0003910|GO:0006281|GO:0006310
Stsc182007g00005 531 FunFam DNA ligase 391 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182007g00005 Stsc-Chr182007 15538 20521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182007g00005 5 531 Core DNA Replication Machinery Family AT1G08130 55.610 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182007g00005 K10747 - gmx:100783155 691.419