Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182007g00004 ATGTCCAAACCACCCTCTGCCTTCGACGCTCTCATGTCCGGCGCTCGCGCCGCCGCCGCTGCCAAGAAGAAGAAATCCGAACAATCGCAGCAACCAACTGCATCTTCTCCCAAGAAACGAAAGCCCCCGTCCTTCACTCCCCCCACTCAAACCTCCACACTAAACCCTAACGATCCCAAACCCTCCGAAACCGTTCCTACGCCGCCGATTGACCCACCCAAGCAGGAACCGGAGAAAGAAGGCCCTCCCCCGACCAAGACTCGCCACGTGGCTTCTTCTTCGTCTTTCTTGCAGGAGCTGAGGGAGCGCGTTCCGCAGCTGAAGGCGAAGCCTCAGAAATTTGAACCTAGCTCAGTGGCATCGTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTAAGGAGTCTGGGAGAATCGCGAGTACAGATATTGCGTGCAATTTGATGAAGACTGTGATATACTCCACCCCTGAGGATCTTCTGCCGCTGATGTATCTCTTGGGGAAGAAGGTTGCTCCGGCGCATGAAGGGGTGGAAATGGGAATTGGTGAGTCTTCGATTGTTAAGGCACTTGCTGAGGCAACTGGAAGAACTGAATCCAAAATCAAGAAACTGTATCAGGAAGTGGGTGATCTGGGATTAGTTGCCAAGGCATGCCGTTCATCTCAGTCTATGATGCGGAAGCCTGAGCCTCTGACTATTAGGAAGGTTTTCAACACCTTCCGAGACATTGCGAAGGAATCTGGTAAAGCCAGTCAAGAGAAGAAAAAGAATCACATAAAGAAACTTGTTGTTGCTGCAACTGACTGTGAACCTCAATATCTTATCGGTCTTCTGCAGGGAAAGTTGCGGATTGGTATGGCTGAAAACACTCTCTTAGCTGCATTAGCCCAAGCAGCAGTATATACTGAAGAACATTCTAAACCACCTGCTGATATTAAGTCTCCTGTAGAAGAAGCTGTAAAAATTGTGAAACAAGCCTATTCAGTTGCTCCTGTTTACGACAAAATAGTATCTGCACTGCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTCACTCCTGGTATTCCAGTTGGACCTATGCTATCAAAACCAACGAAGGGTTTCTCTGAGATTCTAAATACAGTAAAGGATGTGGAGTTTACTTGCGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCCGAGCGGAATACTGGGAAGTATCCTGATGTTGTTGCTGCAATTTCAAGGTGA 1311 0.4798 MSKPPSAFDALMSGARAAAAAKKKKSEQSQQPTASSPKKRKPPSFTPPTQTSTLNPNDPKPSETVPTPPIDPPKQEPEKEGPPPTKTRHVASSSSFLQELRERVPQLKAKPQKFEPSSVASWEKGTPVPFSLLALALDMISKESGRIASTDIACNLMKTVIYSTPEDLLPLMYLLGKKVAPAHEGVEMGIGESSIVKALAEATGRTESKIKKLYQEVGDLGLVAKACRSSQSMMRKPEPLTIRKVFNTFRDIAKESGKASQEKKKNHIKKLVVAATDCEPQYLIGLLQGKLRIGMAENTLLAALAQAAVYTEEHSKPPADIKSPVEEAVKIVKQAYSVAPVYDKIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPTKGFSEILNTVKDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKYPDVVAAISR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182007g00004 436 Gene3D DNA ligase/mRNA capping enzyme 371 436 - -
Stsc182007g00004 436 Pfam DNA ligase N terminus 129 305 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc182007g00004 436 Gene3D - 105 370 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc182007g00004 436 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 395 403 IPR016059 GO:0003909
Stsc182007g00004 436 MobiDBLite consensus disorder prediction 1 97 - -
Stsc182007g00004 436 Pfam ATP dependent DNA ligase domain 371 435 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc182007g00004 436 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 334 434 - -
Stsc182007g00004 436 FunFam DNA ligase 106 373 - -
Stsc182007g00004 436 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 22 435 - -
Stsc182007g00004 436 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 111 361 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc182007g00004 436 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182007g00004 Stsc-Chr182007 12043 14680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182007g00004 2 436 Core DNA Replication Machinery Family AT1G08130 58.219 2.30e-173 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182007g00004 K10747 - gmx:100783155 576.244