LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc182007g00003	ATGTCTTCTTCATCTTCGTCTTTCTTGCAGGAGCTGAAGGACCGCGTTCCGCAGCTGAAGGCGAATCCTCAGAAATTCGAACCTAGCTCAGTGGCATCGTGGAAGAATCGCACGCCTGAGTCTGGGAGAATCGCGACTACAGATATTGCGTGCAATTTGATGCAAACTGTGATATACTCTACCCCTGGGGATCTTTTGCCGCTTATGTATCTCTTGGCGAAGAAGGTTTGTCCGGCGCATGGAGGGCTGGAACTGGATCTTATTAAATATCCTCAGCTGATCTTATTAAATTCTTTCCCGAACATTGTCCGTATCTCAACTCATTTGTTGATAGTTCAATCTGGAAAATTCAGTCAACGGAAGAAAAGGACTCTTATACAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTTATTGGTCTTCTGCTGGGAAAGTTGCGGATTGGTATGGCTGAAAACACTCTCTTAGCTGCATTAGGCCAAGCGGCAGTATATACTGAAAAACATTCTACACCTCCTGCTGATATTAAGTCTCCTGTAGAAGAAGGCTCTTAG	564	0.4486	MSSSSSSFLQELKDRVPQLKANPQKFEPSSVASWKNRTPESGRIATTDIACNLMQTVIYSTPGDLLPLMYLLAKKVCPAHGGLELDLIKYPQLILLNSFPNIVRISTHLLIVQSGKFSQRKKRTLIQALLVAATDCEPQYLIGLLLGKLRIGMAENTLLAALGQAAVYTEKHSTPPADIKSPVEEGS	187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc182007g00003	187	PANTHER	DNA LIGASE 1/3 FAMILY MEMBER	112	172	-	-
	Stsc182007g00003	187	MobiDBLite	consensus disorder prediction	23	37	-	-
	Stsc182007g00003	187	MobiDBLite	consensus disorder prediction	16	37	-	-
	Stsc182007g00003	187	Gene3D	-	22	90	IPR036599	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
	Stsc182007g00003	187	Gene3D	-	103	186	IPR036599	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
	Stsc182007g00003	187	SUPERFAMILY	ATP-dependent DNA ligase DNA-binding domain	39	175	IPR036599	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
	Stsc182007g00003	187	Pfam	DNA ligase N terminus	112	162	IPR012308	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc182007g00003	Stsc-Chr182007	5717	7317	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc182007g00003	10	187	Core DNA Replication Machinery Family	AT1G08130	37.069	6.13e-39	139

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc182007g00003	K10747		-	gmx:100783155	161.384