Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182006g00004 ATGGGTGAAACAAGATTGAAATCCAAAAATGTAGCAACATTGTTGTTGATGTTATTGTTGGGGCGGTGTGTGGTGTCGAATAACGATATTAAGGGTGATGAAGCTAATTATCTGAACAAGTTGAAGAAGGCCATATCCCCTGTTCCCCCCAGCTGGTCCTCCGAAAACATGTGCAATTGGAGCGGTGTGAGCTGCATCTCCTCTGGCGGAACCTCCAACGTAGAAGAAATCATCCTGGATTCAATGTCGCTCAAGGGACAACTCCCTCCAGGTTTCAACAACTCCTTGGGCTATCTCAGACGCCTCAGTCTCATTAACAACTATTTCACTGGTCCTCTTCCCTCCCTCGTCGGCCTCATAAGCCTCCAAGACGTGGACCTGAGAAGCAATAACTTCACTTCCGTTCCTCACGGTTGCTTCCAGAACCTACCTAATTTGAACAGGCTCATCTTGTATAACAATAACAACCTCGCACCCTGGACACTATTTTCCGCCAATGTAACTGACTGTCTTGCACTAACCACTCTCTCTCTAGGCGCTACAAACCTCATGGGATCCTTGCCAGACACATTAGGCTCCTTAACGAACTTGCAGCTTCTTGAACTATCCAGTAACAACTTAACCGGGTCGTTGCCCAAGTCTTTTGCGCAACTAATCAACCTACAAACCCTTCTTCTCAATGACCAGGAGCACGGTGGGTTGTCGGGTACAATTGAATTCCTTTCATCCATGACCCACTTGTCTTACGTGAATCTTGAGAGGAACTCCTTCCAAGGTCCCATTCCCGACTTGTCAAATTGGAAGGACTTGCAAGAACTGATGCTTGGGGGCAATAAATTAACTGGTGAAGTTCAACCTTCTGTCATGAATTTCTCCACATTGTGGCAGGTTTCATTGGAAAACAACTGGCTGCAGGGCCCTATGCCCCTCTTCAACAGGACTATTACGACGAATCTAAGTCTTGAAGGAAATGGATTCTGTTTAGATCATGCTGGCCCTTGCAACCACACTGTCACCACTTTGCTACAAGTTGCTGAGGCTTTTGGCTATCCGCTTCTCTTGGCGCGCACCTGGCGAGGGAACAATCCCTGTAAACGCTGGAGTTTCATCAACTGCGATAGCCAGGACAAGATCAGAACCGTCAATTTGACGAAGCTGAATCTCACCGGAACTATCTCACCGGCCTTTGCCAATTTAACTGATCTGCGAGAACTCTATCTGAGCGGCAACAATTTAAAGGGATCAATACCTGAGAGTTTGACGAGTTTATCTCAACTCCAGATTATGGATGTCTCCAACAACAACTTATCAGGAACCATTCCTACATTCTCGCCAGCCATCACGCTCAATACTTCAAATAATTTTTATCTTAATCCTGGGAATTCTCCACCCAAAGCAAGCCCTCCTCCTCATCCTAGTAAAACCACACATCACTACTGGATTAAATTAGGTAGTGCTGCAGGTAGTGTTGTTGGAGTTCTTGTAATCTTTGGAGTGATTATTTTTATCTGTAAGAGGCATTTTAATTTAGTAGAAAAGATAATGTTGAGGAGAGAACGACAGCATGGTGATCACTATTTTGAAAATCTCATTGAAAGTTATGGATCCTTGAGTCTTAAGCGATATACATATAAAGAAGTAAAAAACATGACAAACTCATTTAAAGAAAAATTAGGAGAAGGAGGATATGGCATTGTCTATAAAGCAAGTTTGGCTAACGGTCAACAAGTGGCAGTAAAAATACTGAAAGAGTCAAAGGGAAGTGTGAAAGAATTTGTAGATGAAGCTTTTATCATTAGCAGGACGTCTCATGTGAATATTGTTTCACTTTTGGGATTTTGTTATGATAAGAATAAAAAAGCACTTATTTATGAATTCATTCATAACGACTCTTTAGATAAGTTCGCTTGTAGAAAAGATTCTTCTAGTACTACTCATAATCTGGATTGGAAAACCTTGTATCAGATCTCAATAGGAATTGCTCGAGGACTAGAATATCTACATCGAGGATGTAATACAAGAATTTTGCATCTTGATATTAAACCTCAAAACATTCTTCTGGACGAGCATTTTCGCCCAAAGATTGCAGATTTTGGATTGGCTAAGATATGTAAAAAGGATCAAAGTATTGTATCTATAATGGGTACAAGAGGAACTCCAGGGTACATTGCACCAGAAATATTTAGCCGAGTATATGGCGAAGTTTCTCACAAATCTGATGTGTATAGTTATGGTATGTTGATCCTTGAAATTATTGGAGGAAGGCGAAACTACTACGAGAATGTAGAATCACAAGCCAGCGAAATTTGCTTTCCAGATTGGATTTACAAAGATCTTGAACAAGGTAACTTTCCTACCAATTGTTTGCCCCATAGAGAAGAAGAAAATGATATTGCAAGGAAAATGACTCTAGTGAGCTTATGGTGTATCCAACCAAATCCATTGAATAGACCTTCTATTAGTGATGTAATAGACATGCTAGAAGGTCCGGTCGATTCAATACCATATCCTCCAAAACCAGACTTATTTTCTTCTAAAAGATTTATTTCACAAGATACAAATGTATCTAGTAGTAACAGATACGAGACAAATTCAACAACAGAAGAAATTGTCTCAAAAAAAAGGTAA 2628 0.4083 MGETRLKSKNVATLLLMLLLGRCVVSNNDIKGDEANYLNKLKKAISPVPPSWSSENMCNWSGVSCISSGGTSNVEEIILDSMSLKGQLPPGFNNSLGYLRRLSLINNYFTGPLPSLVGLISLQDVDLRSNNFTSVPHGCFQNLPNLNRLILYNNNNLAPWTLFSANVTDCLALTTLSLGATNLMGSLPDTLGSLTNLQLLELSSNNLTGSLPKSFAQLINLQTLLLNDQEHGGLSGTIEFLSSMTHLSYVNLERNSFQGPIPDLSNWKDLQELMLGGNKLTGEVQPSVMNFSTLWQVSLENNWLQGPMPLFNRTITTNLSLEGNGFCLDHAGPCNHTVTTLLQVAEAFGYPLLLARTWRGNNPCKRWSFINCDSQDKIRTVNLTKLNLTGTISPAFANLTDLRELYLSGNNLKGSIPESLTSLSQLQIMDVSNNNLSGTIPTFSPAITLNTSNNFYLNPGNSPPKASPPPHPSKTTHHYWIKLGSAAGSVVGVLVIFGVIIFICKRHFNLVEKIMLRRERQHGDHYFENLIESYGSLSLKRYTYKEVKNMTNSFKEKLGEGGYGIVYKASLANGQQVAVKILKESKGSVKEFVDEAFIISRTSHVNIVSLLGFCYDKNKKALIYEFIHNDSLDKFACRKDSSSTTHNLDWKTLYQISIGIARGLEYLHRGCNTRILHLDIKPQNILLDEHFRPKIADFGLAKICKKDQSIVSIMGTRGTPGYIAPEIFSRVYGEVSHKSDVYSYGMLILEIIGGRRNYYENVESQASEICFPDWIYKDLEQGNFPTNCLPHREEENDIARKMTLVSLWCIQPNPLNRPSISDVIDMLEGPVDSIPYPPKPDLFSSKRFISQDTNVSSSNRYETNSTTEEIVSKKR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182006g00004 875 Gene3D Transferase(Phosphotransferase) domain 1 627 832 - -
Stsc182006g00004 875 MobiDBLite consensus disorder prediction 853 875 - -
Stsc182006g00004 875 ProSitePatterns Protein kinases ATP-binding region signature. 558 580 IPR017441 GO:0005524
Stsc182006g00004 875 FunFam Leucine-rich repeat receptor-like kinase 336 459 - -
Stsc182006g00004 875 Gene3D Ribonuclease Inhibitor 336 459 IPR032675 -
Stsc182006g00004 875 PANTHER OSJNBA0070M12.3 PROTEIN 15 833 - -
Stsc182006g00004 875 FunFam PR5-like receptor kinase 627 837 - -
Stsc182006g00004 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672|GO:0006468
Stsc182006g00004 875 ProSiteProfiles Leucine-rich repeat profile. 401 423 IPR001611 GO:0005515
Stsc182006g00004 875 FunFam serine/threonine-protein kinase PBS1-like 521 626 - -
Stsc182006g00004 875 SUPERFAMILY Protein kinase-like (PK-like) 529 827 IPR011009 -
Stsc182006g00004 875 Gene3D Ribonuclease Inhibitor 31 334 IPR032675 -
Stsc182006g00004 875 SUPERFAMILY L domain-like 343 446 - -
Stsc182006g00004 875 SUPERFAMILY L domain-like 52 326 - -
Stsc182006g00004 875 ProSiteProfiles Protein kinase domain profile. 552 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00004 875 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Stsc182006g00004 875 SMART LRR_typ_2 399 422 IPR003591 -
Stsc182006g00004 875 SMART LRR_typ_2 119 142 IPR003591 -
Stsc182006g00004 875 SMART LRR_typ_2 194 217 IPR003591 -
Stsc182006g00004 875 SMART LRR_typ_2 423 445 IPR003591 -
Stsc182006g00004 875 Pfam Protein kinase domain 555 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00004 875 Pfam Leucine rich repeat N-terminal domain 33 65 IPR013210 -
Stsc182006g00004 875 Pfam Leucine rich repeat N-terminal domain 339 373 IPR013210 -
Stsc182006g00004 875 Gene3D Phosphorylase Kinase; domain 1 528 626 - -
Stsc182006g00004 875 SMART serkin_6 552 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182006g00004 Stsc-Chr182006 12752 15972 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182006g00004 483 842 Receptor kinase-like Gene Family AT1G66910 49.724 2.29e-117 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc182006g00004 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182006g00004 - K00924 aip:107635702 758.444