Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182006g00002 ATGTCCGATACAATTGAATTTCTATCATCCATGACTCAGTTGGCTCTCGTGGATCTTGAGAGGAACTCCTTCGAAGGTCCCATTCCGGACCTGCCAAATTGCACCCAGTTGCAATATCTGATGCTTGGGAACAATAAATTAACAGGTGAAGTTCCACCTTCTTTCATGAATCTCTCCATGGGGCAGGTTTCAATAGAAAACAACTTGCTGCAGGGCCCTATGCCTCTCTTCAACACGACTATTACCAAGAATGCAAGTGTTGAAGGAAATGGATTCTGTTTAGATCATGCTGGCCCTTGCCACCACACGGTCACCACTTTGCTCCAAGTCGCTGAGGCGTTTGGGTATCCGCTTCTCTTGGCGCGCACGTGGCGAGGGAACACTCCCTGTAAAGCCTGGAGTTTCATCACGTGCGATATCCAGGACAAGATCAGAACCGTCAATTTGACCAAGCTGAATCTCACCGGAACCATCTCACCGGCGTTTGCCAATTTAACTGATCTACGAGAACTCTATCTCAGCGGTAATAATTTGAAGGGATCAATACCTGAGAGTTTGACCACTTTATCTCAACTCAACATTCTGGATGTCTCCAACAACAACTTAACAGGAGCCGTTCTCAGATTCTCGCCAGGCATCACGCTCAATACTGCAAATAATAATGTTGTTCTTACTGGGAATTCTCCACCCAAAGCAAGCCCTCCTCATCCTAGTAAAACCACACATCACTACTGGATTAAATTAGGTAGTGCTGCAGGTAGTGTTGTTGGAGTTCTTGGAATTTTTGGAGTGATTATTTTTATCTGTAAGAGGCGTTTTAATTTATTAGAAAAGATAATGTTGGGCAGAGAAAGAAAGCATGGTGATCACTATTTTGAAAATCTCATTGAAAGTTATGGTTCCTTGAGTCTTAAGCGATATACATATAAAGAAGTAAAAAAGATGACAAACTCTTTTAAAGAAAAATTAGGAGAAGGAGGATATGGCATTGTGTATAAAGCAAGTTTGGCTAACAGTGAACAAGTGGCGGTAAAAATACTGAAAGAGTCAAAGGGAACTGTGAAAGAATTTGTAGATGATGTTTTTATCATTAGTAGAACATCTCATGTGAATATTGTTTTACTTTTGAAATTTTGTTATGATAAGAATAAAAGGGCACTTGTCTATGAATTCATGCATAATGACTCTTTGGATAAGTTCACTCACAGAAAAGATTCTTCTAGTACTGCTCAAATCTCAATAGAAATTGCTCGAGGAGTAGAATATTTACATCGAGGATGTAATACAAGAATTTTGCATCTTGATATTAAACCTCAAAATATTCTTCTGGACGAGCATTTTCTTCCAAAGATTGTAGATTTCGGATTGGCTAAAATATGCAAGAAGGATCAAAGTATTGTATCTATAATAGGTACAAGAGGAACTCCAGGAAACATTGCACTAGAAGTATTTAGCCGAGCATATGGCGAAGTTTCTCATAAATCAGATGTGTATAGTTATGGCATGTTGATTCTTGAAATTACTGGAGGACTATCATGA 1539 0.3931 MSDTIEFLSSMTQLALVDLERNSFEGPIPDLPNCTQLQYLMLGNNKLTGEVPPSFMNLSMGQVSIENNLLQGPMPLFNTTITKNASVEGNGFCLDHAGPCHHTVTTLLQVAEAFGYPLLLARTWRGNTPCKAWSFITCDIQDKIRTVNLTKLNLTGTISPAFANLTDLRELYLSGNNLKGSIPESLTTLSQLNILDVSNNNLTGAVLRFSPGITLNTANNNVVLTGNSPPKASPPHPSKTTHHYWIKLGSAAGSVVGVLGIFGVIIFICKRRFNLLEKIMLGRERKHGDHYFENLIESYGSLSLKRYTYKEVKKMTNSFKEKLGEGGYGIVYKASLANSEQVAVKILKESKGTVKEFVDDVFIISRTSHVNIVLLLKFCYDKNKRALVYEFMHNDSLDKFTHRKDSSSTAQISIEIARGVEYLHRGCNTRILHLDIKPQNILLDEHFLPKIVDFGLAKICKKDQSIVSIIGTRGTPGNIALEVFSRAYGEVSHKSDVYSYGMLILEITGGLS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182006g00002 512 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Stsc182006g00002 512 SUPERFAMILY L domain-like 6 207 - -
Stsc182006g00002 512 PANTHER OSJNBA0070M12.3 PROTEIN 1 510 - -
Stsc182006g00002 512 FunFam Leucine-rich repeat receptor-like kinase 102 226 - -
Stsc182006g00002 512 Gene3D Ribonuclease Inhibitor 102 227 IPR032675 -
Stsc182006g00002 512 Gene3D Transferase(Phosphotransferase) domain 1 392 512 - -
Stsc182006g00002 512 FunFam serine/threonine-protein kinase PBS1-like 288 391 - -
Stsc182006g00002 512 Gene3D Phosphorylase Kinase; domain 1 293 391 - -
Stsc182006g00002 512 ProSiteProfiles Protein kinase domain profile. 317 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00002 512 SMART serkin_6 317 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00002 512 SUPERFAMILY Protein kinase-like (PK-like) 294 510 IPR011009 -
Stsc182006g00002 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Stsc182006g00002 512 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Stsc182006g00002 512 Pfam Protein kinase domain 319 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00002 512 Gene3D Ribonuclease Inhibitor 1 100 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182006g00002 Stsc-Chr182006 6583 8731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182006g00002 248 510 Receptor kinase-like Gene Family AT1G66910 48.881 8.33e-79 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc182006g00002 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182006g00002 - K00924 ahf:112743101 513.457