Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182006g00001 ATGTGTCAAGCAAGATTGAAACCCAAAGCTCTAACCAGCAGCAGCGGTTTAGCAACATTCTTGTTGATCTTGATGTTGTGGTGGCGGTGTGTGGTGTCGGATAACGAGTTAGCGGATTATGAAGCTGCTTATTTGAAGAAGCTTAGGAAGGCCATATCCCCTGTTCCCTCCAACTGGCTCACCACCACTAATATGTGCGACTGGAGCCATGTGATTTGTACGGACGGTGTCGTAGGCCGCACCGTAGAATCAATCAACCTCATGTCCCAGTCCCTTAATGGAGAACTCCCTCCAGGTCTCAACAACTCCTTACGAAACCTCAAAACTCTCGATCTCACTAACAATTTTCTCACTGGCCCTCTGCCCTCCTTTGCTGGCCTCTCTAACCTCCAAGAGCTGAAACTGGGATTCAACAAATTCACCTCCGTCCCTGACGGTTGTTTCCAGGGCCTAACAAGTTTGCAGCAGTTCCACTTTCATAACAACACCAACCTCTCACCCTGGACATTTCCCGCTACTTTGAGTGCCTCCTCTAAACTCAACATACTCGATCTGGACTCTTCCAATCTCATGGGCTTCTTGCCAGATATATTTGATTCCCTATCTGACTTGGAGATTCTTGATCTCTCTTCTAACAACCTCACTGGCATCTTGCCCAACTCATTCTCAAAACTACTCAATCTTAAATGGTTGTATCTCTCCAGCAACCAGCTGAGGTTTTCGGGTAAAATTGGATTCCTTCCATCCATGATCCACTTGGAATATTTGTGGCTTCAGGGGAACTCCTTCCAGGGTCCAATTCCTGATTTATCAAATTGCACCAAATTGAAAGAATTGTATCTTGACAACAATCAATTCACTGGTGTAGTTCCACATGCTCTCGTGAATCTCCCGTTATTGGAGGAGGTTTCATTGGACAAAAACTGGCTGCAGGGCCCTATGCCTGCGTTCAACAAGAACGTGAAAGCAAGTCTTGAAGGAAATGGATTCTGTCTAAACCATCCTGGCCCTTGCGACAACACAGTCACCACTCTGCTGCAAGTTGCTGACGCATTTCGGTATCCACTTCTCTTGGCGCGCACGTGGCGAGGGAACAATCCCTGTAAAAGCTGGAGTTTCATCACGTGCGATATACAGGGCAAGATCAGAACCCTCAATTTGACGAACCGGAATCTCAACGGAACCATCTCACCCGCCTTTGCCAATTTAACTGATTTGCGAGAACTGTATCTTGGCGGGAGTAATTTAACAGACTCGATACCCGAAAGTTTGACGACTTTGTCACAACTCAAGATTCTCGATGTCTCCAACAACAACTTATCAGGGAGCGTACCCAGATTCTCGCCTAACACCATCGTCAACACAGCAAATAATTCATTTCTTCTTTGGAGTTCTCCGTCACCCAAAGCAAGTCCTCCTCCTCCATCTACTAATAAGGCAAGCCCAACTGCCTCTAACACCACACGTCATCTTTGGATTAAATTAGGTGCCGGTGCTGCAGGTAGTGTTGTTGGGATTATTGTAATATTTGGAGTGATTGTCTTTAACAATAAGAGGCGTTTTAGTTTAGCGCAAAAGATAATATCAAGGAGGAAAAGAAAGCAGGTTGATCATTATGTTGAAGATCTCATTAAAAGTTACAGTTCTTTGAGTCTTAAGCGATATACCTACAAAGAAGTGAAAAAAATGACAAAGTCTTTTAGTGAGAAATTAGGAGAAGGAGGATATGGCATTGTGTATAAAGCAAGCTTAGCTGATGGTCAGCTGGTGGCAGTAAAAATACTCAAAGAATCAAAAGGAACTGTAGAAGAATTTATAGATGAGGTTTTTATCATTAGCAGAACATCCCACGTAAACATTGTTTCACTTTTGGGATTCTGTTATGAGAAAAATAAAAGAGCATTGATCTATGAATTCATGCATAATGACTCTTTACATAAGTTCTCTTACAGAAAAGAGTCTGCAAATAATCTTTGTAATTTGGAATGGAGCACCTTGTACCAAATTTCAATTGGAATTGCTCGAGGACTTGAATATTTGCATCGAGGATGTAATACAAGAATTCTTCATCTTGATATCAAACCTCAAAATATTCTTCTCGATGAATATTTTCGTCCCAAGATTGCAGATTTTGGATTAGCTAAAATATGTAAGAAGGATCAAAGTATTGTATCTATATTAGGTACAAGAGGAACTCCGGGATACATTGCACCAGAAGTTTTCAGTCGGACTTACGGTGGAGTTTCTCAAAAATCTGATGTATATAGCTATGGCATGTTGATTCTTGAAATTATTGGAGGAAGAGAGAATTATCGTGAGAATGAAGGATCACACACCAGTGAAATTTTTCCAGATTGGATCTACAAAGATCTTGAGCAAGGAAATGTTCCTACAAGGTGCTTGCCCATCAGAGAAGAAGAAAATGACATGGTAATGAAAATGACTTTAGTGAGCTTATGGTGTATTCAACCAAATCCATTGGATAGGCCTTCTATCAGTAAAATAATAGACATGTTAGAAGGACCACTAGAGTCAATACCATATCCTCCAAAACCTGTCCTATTTTCTCCTGAAAGACTCATCTCACAATATTCAGATATATCTTATGGCATGGAGCATGAGACAAGTTCAACAACAGTAGAGGACTTAGAAAAAGGGTAA 2661 0.4156 MCQARLKPKALTSSSGLATFLLILMLWWRCVVSDNELADYEAAYLKKLRKAISPVPSNWLTTTNMCDWSHVICTDGVVGRTVESINLMSQSLNGELPPGLNNSLRNLKTLDLTNNFLTGPLPSFAGLSNLQELKLGFNKFTSVPDGCFQGLTSLQQFHFHNNTNLSPWTFPATLSASSKLNILDLDSSNLMGFLPDIFDSLSDLEILDLSSNNLTGILPNSFSKLLNLKWLYLSSNQLRFSGKIGFLPSMIHLEYLWLQGNSFQGPIPDLSNCTKLKELYLDNNQFTGVVPHALVNLPLLEEVSLDKNWLQGPMPAFNKNVKASLEGNGFCLNHPGPCDNTVTTLLQVADAFRYPLLLARTWRGNNPCKSWSFITCDIQGKIRTLNLTNRNLNGTISPAFANLTDLRELYLGGSNLTDSIPESLTTLSQLKILDVSNNNLSGSVPRFSPNTIVNTANNSFLLWSSPSPKASPPPPSTNKASPTASNTTRHLWIKLGAGAAGSVVGIIVIFGVIVFNNKRRFSLAQKIISRRKRKQVDHYVEDLIKSYSSLSLKRYTYKEVKKMTKSFSEKLGEGGYGIVYKASLADGQLVAVKILKESKGTVEEFIDEVFIISRTSHVNIVSLLGFCYEKNKRALIYEFMHNDSLHKFSYRKESANNLCNLEWSTLYQISIGIARGLEYLHRGCNTRILHLDIKPQNILLDEYFRPKIADFGLAKICKKDQSIVSILGTRGTPGYIAPEVFSRTYGGVSQKSDVYSYGMLILEIIGGRENYRENEGSHTSEIFPDWIYKDLEQGNVPTRCLPIREEENDMVMKMTLVSLWCIQPNPLDRPSISKIIDMLEGPLESIPYPPKPVLFSPERLISQYSDISYGMEHETSSTTVEDLEKG 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182006g00001 886 FunFam Leucine-rich repeat receptor-like kinase 340 463 - -
Stsc182006g00001 886 SMART LRR_typ_2 201 224 IPR003591 -
Stsc182006g00001 886 SMART LRR_typ_2 104 126 IPR003591 -
Stsc182006g00001 886 SMART LRR_typ_2 225 248 IPR003591 -
Stsc182006g00001 886 SMART LRR_typ_2 127 150 IPR003591 -
Stsc182006g00001 886 SMART LRR_typ_2 427 449 IPR003591 -
Stsc182006g00001 886 SMART LRR_typ_2 273 296 IPR003591 -
Stsc182006g00001 886 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Stsc182006g00001 886 Gene3D Ribonuclease Inhibitor 340 462 IPR032675 -
Stsc182006g00001 886 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515
Stsc182006g00001 886 Pfam Leucine rich repeat 382 440 IPR001611 GO:0005515
Stsc182006g00001 886 Pfam Leucine rich repeat 105 162 IPR001611 GO:0005515
Stsc182006g00001 886 ProSiteProfiles Leucine-rich repeat profile. 203 224 IPR001611 GO:0005515
Stsc182006g00001 886 Gene3D Transferase(Phosphotransferase) domain 1 640 846 - -
Stsc182006g00001 886 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
Stsc182006g00001 886 FunFam PR5-like receptor kinase 640 849 - -
Stsc182006g00001 886 Gene3D Phosphorylase Kinase; domain 1 539 639 - -
Stsc182006g00001 886 Gene3D Ribonuclease Inhibitor 39 336 IPR032675 -
Stsc182006g00001 886 PRINTS Leucine-rich repeat signature 427 440 - -
Stsc182006g00001 886 PRINTS Leucine-rich repeat signature 204 217 - -
Stsc182006g00001 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Stsc182006g00001 886 SUPERFAMILY L domain-like 52 452 - -
Stsc182006g00001 886 Pfam Protein kinase domain 568 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00001 886 SUPERFAMILY Protein kinase-like (PK-like) 543 839 IPR011009 -
Stsc182006g00001 886 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 146 244 - -
Stsc182006g00001 886 ProSiteProfiles Protein kinase domain profile. 565 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00001 886 MobiDBLite consensus disorder prediction 464 484 - -
Stsc182006g00001 886 SMART serkin_6 565 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc182006g00001 886 Pfam Leucine Rich Repeat 275 297 IPR001611 GO:0005515
Stsc182006g00001 886 ProSitePatterns Protein kinases ATP-binding region signature. 571 593 IPR017441 GO:0005524
Stsc182006g00001 886 PANTHER OSJNBA0070M12.3 PROTEIN 22 844 - -
Stsc182006g00001 886 Pfam Leucine rich repeat N-terminal domain 343 377 IPR013210 -
Stsc182006g00001 886 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Stsc182006g00001 886 FunFam S-receptor-like serine/threonine-protein kinase 532 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182006g00001 Stsc-Chr182006 1039 4517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182006g00001 552 861 Receptor kinase-like Gene Family AT5G38280 59.365 2.95e-118 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc182006g00001 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182006g00001 - K00924 aip:107635702 803.512