LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc182004g00002	ATGGCTGCTTCTGCTGCAAAGAACAGTGGTAAATCCACAAAGGGGGCTTTTGCTGATCAAGATTCTCATCATCAGAGGGTAATTGCTGAAAGTGAAAGGCACCAAGATTTGGAGATGATGATGATGATAGATAAGGGAAAAGGTGTTGAGAGGCGGCAATGGAATCCAGTTTTTGATGAAGCTTCCATGTCAAATAGGCCTCATAAGAAGATTAATCAATCACCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCACCATCACCGTTTCTACAACAACAACAACCTCCTTCTTCTTCTTCATCTTCAAGAATAGTGTTCCCTTTTGCCTTTGAAGGCTCTCAAACTCAGAATCAAGCAGCAATGCAATTCCCACACCAATTTGGAACCACAAACTTGCCCCTTTTCCATTCACCACAGCCACAAATTCAGCCATCACAACTACCATTACATCAAAACATGATATCTTTTGGGTCCCAACAACACCAACACCACCACCTTCAGAATCTTCAATATTGGAGTGACACACTGAATCTAAGTCCAAGAGGGAGAGCCATGGCAATGATGAACAACAACAGAATAGGCCCTGATGGAAGGCCATTGTTTTCGCCTTCGCCTCCGGTGCCATTGAATGCTACAAAGCTCTACAGAGGTGTGAGGCAGCGCCATTGGGGGAAATGGGTGGCTGAGATTCGCCTCCCTCGCAATAGGACTCGCCTTTGGCTTGGGACATTCGACACTGCTGAGGACGCCGCCATGGCCTATGACCGAGAGGCCTTCAAGCTTAGAGGGGAGAATGCTAGGCTAAATTTCCCTGAACTCTTTCTCAACAAGGAGAAAGATCAATCACCAAAATTGGCAGAAGAATCTCCTTCTTATGCTTCTGCATCAAAGATACAAGAGCCAGAGACAGAGCCAGAACCAGAGCCAGAGCCTGAGCCAGAAGAAGACATCACTATGCAGCAGGATTTGAACACTGTGAGCATGCCTCCGCCACCGCTACCACCACCAATGCCGCCGGCTTCACTCAATGCTGATAATGATTCAGGTGTTTCACAGTCTCAGGAGTTGGTTTGGGGGGAAATGGCTGCTTGGTTCAATGCAATTCCTGCAGCTTGGGGTCCTGGTAGTCCTGTGTGGGATGATTTGGACACAAACAACAATCTTCTGTTTCAATCACAGATTCCATTTATGACGCAGAATCAGCAAGAACTCAATGATGATGATGTTGTTGATGCTGAAGCTCATAGAATAACAACAGAGGGAGATAATAACACAAAACCAGGTTCTTCTTCCTCTTCTTCTTGTCCTATTAGACCCTTCTTCTGGAAGGATCAGGACTGA	1356	0.4558	MAASAAKNSGKSTKGAFADQDSHHQRVIAESERHQDLEMMMMIDKGKGVERRQWNPVFDEASMSNRPHKKINQSPSSSSSSSSSSSSSSSPSPFLQQQQPPSSSSSSRIVFPFAFEGSQTQNQAAMQFPHQFGTTNLPLFHSPQPQIQPSQLPLHQNMISFGSQQHQHHHLQNLQYWSDTLNLSPRGRAMAMMNNNRIGPDGRPLFSPSPPVPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKEKDQSPKLAEESPSYASASKIQEPETEPEPEPEPEPEEDITMQQDLNTVSMPPPPLPPPMPPASLNADNDSGVSQSQELVWGEMAAWFNAIPAAWGPGSPVWDDLDTNNNLLFQSQIPFMTQNQQELNDDDVVDAEAHRITTEGDNNTKPGSSSSSSCPIRPFFWKDQD	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc182004g00002	451	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	1	387	-	-
	Stsc182004g00002	451	SUPERFAMILY	DNA-binding domain	219	277	IPR016177	GO:0003677
	Stsc182004g00002	451	CDD	AP2	218	278	IPR001471	GO:0003700\|GO:0006355
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	421	451	-	-
	Stsc182004g00002	451	ProSiteProfiles	AP2/ERF domain profile.	219	276	IPR001471	GO:0003700\|GO:0006355
	Stsc182004g00002	451	FunFam	Ethylene-responsive transcription factor 2	218	277	-	-
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	332	346	-	-
	Stsc182004g00002	451	Gene3D	AP2/ERF domain	219	277	IPR036955	GO:0003700\|GO:0006355
	Stsc182004g00002	451	PRINTS	Ethylene responsive element binding protein signature	220	231	IPR001471	GO:0003700\|GO:0006355
	Stsc182004g00002	451	PRINTS	Ethylene responsive element binding protein signature	242	258	IPR001471	GO:0003700\|GO:0006355
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	1	108	-	-
	Stsc182004g00002	451	SMART	rav1_2	219	282	IPR001471	GO:0003700\|GO:0006355
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	67	108	-	-
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	284	357	-	-
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	17	54	-	-
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	426	443	-	-
	Stsc182004g00002	451	MobiDBLite	consensus disorder prediction	1	16	-	-
	Stsc182004g00002	451	Pfam	AP2 domain	220	268	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc182004g00002	Stsc-Chr182004	24153	25785	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc182004g00002	36	388	AP2-EREBP Transcription Factor Family	AT4G28140	39.660	1.08e-58	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Stsc182004g00002		AP2	3e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc182004g00002	-		-	adu:107477889	664.455