LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc182003g00001	ATGTATGCGAATGCGAGCCAGTTTGACGGCAACGCCGCCTTCTCCGGCGGCGGATTCATGCCCTCTCAGACTACTCAGACTCACGACTCTTCCTCCACCTTCTCTACTTCCAGAAATCGTGATGCTCAGTCGTTGCTTCCTCTGACGGTTACACTCGTGGGAAGGATATGCAACAAAAATGGGATGATTACTGAAGTTCATTTTGTCCTTGATGATGGCACTGGAAAGATTGAGTGTAATAAATGGCTTCAAGAAGCAGCGGAATCAAATGAAGTGGACGGTATCATGGATGGAGTGTATGTGCGTCTTCATGGACAATTAAAAGGCCTTAATGGGAAAAGGATTTTGAATGTTTTCTCTTTTAGGCCTGTGACTGACTTTAATGAGATTGCCAACCATTTCATTGAATGTATATATGTTCATCTCTACAATTCCAAGCAAAAGGCTGCTGTACCTAATCAGCAATATGCTACAAATTCAGCAACAATAACACCCACAAAAGCTTACCAAGGTCTCCCACCAAATCAATTCTCTGGTCAGCATAACAATGGTCAGACAAGGCCCGAAGACGTGGTCCTGGATATTTTGCATCTTCCCCAACACAGTGCATTGGAAGGGGGAGTCTCTATTAAACTTATTGAAGAGCATCTTCGACTTCCTAAGGACAAGCTGATGTTGGCTATCAAAAATCTTATTGATGAAGGCCAGATTTATGAAGCCATAAGTGATCACTACAAGTCAACCATCAATGGTTGA	756	0.4312	MYANASQFDGNAAFSGGGFMPSQTTQTHDSSSTFSTSRNRDAQSLLPLTVTLVGRICNKNGMITEVHFVLDDGTGKIECNKWLQEAAESNEVDGIMDGVYVRLHGQLKGLNGKRILNVFSFRPVTDFNEIANHFIECIYVHLYNSKQKAAVPNQQYATNSATITPTKAYQGLPPNQFSGQHNNGQTRPEDVVLDILHLPQHSALEGGVSIKLIEEHLRLPKDKLMLAIKNLIDEGQIYEAISDHYKSTING	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc182003g00001	251	Gene3D	-	181	249	IPR036388	-
	Stsc182003g00001	251	MobiDBLite	consensus disorder prediction	19	38	-	-
	Stsc182003g00001	251	Gene3D	-	23	149	IPR012340	-
	Stsc182003g00001	251	FunFam	replication protein A 32 kDa subunit A-like	22	146	-	-
	Stsc182003g00001	251	SUPERFAMILY	"Winged helix" DNA-binding domain	183	248	IPR036390	-
	Stsc182003g00001	251	SUPERFAMILY	Nucleic acid-binding proteins	48	145	IPR012340	-
	Stsc182003g00001	251	PANTHER	REPLICATION PROTEIN A-RELATED	7	249	IPR040260	-
	Stsc182003g00001	251	Pfam	Replication protein A C terminal	141	243	IPR014892	-
	Stsc182003g00001	251	CDD	RPA2_DBD_D	49	142	-	-
	Stsc182003g00001	251	PIRSF	RPA32	49	249	IPR014646	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Stsc182003g00001	251	PIRSF	RPA32	2	52	IPR014646	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc182003g00001	Stsc-Chr182003	1654	4690	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc182003g00001	8	201	Core DNA Replication Machinery Family	AT3G02920	46.222	1.42e-61	191

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc182003g00001	K10739		-	qsa:O6P43_022320	311.997