Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181g00010 ATGGAGCTATTTCCTTCTTCTCCAAAAAAATATGATGTTTTTGTGAGCTACAAAGGTGGTGACACTCAAATCAACTTCATTAGTAACCTAAACTCAGCACTCACCAATGCAGGCATTAAAATATACATTGATAGTTACCTCCGAACGGGAGATGCGATATGGCCGCCGCTTCGCGAGGCCATCGAAAACTCCAGTGTAGCCCTTGTGATCTTTACAAAGGGCTACGCGTCTTCCAAATGGTGTTTGGAAGAACTCGTGAAGATACTGGAACGGCGAAGAAGGGAGGGAATGGTGGTTATACCTCTGTTTTACAATGTTGATCCTTGTGATGTAAGGAATCAGAATGGGACATATGGAGAAGCATTTGCAAAACATGAACGGTGCTTCTTGTTGGATGGAAAAGACAAGAAGGGAAAAGAAGATGCTCAGAAGAAACTGTGTCAATGGAGAGCTGCACTCACCGAAGCTGCTAATATATCTGGATGGTACACTCGAAACAATACGAACGCATCTGAAGTCATTGAGAAAATGGTCGGAGATGTATTGAAAGTGCTGGAGTTAAGGTTCCCTGAGGAACTAAAATGCAGAGACCTTGTTGGACTTGACAAAATCCTCAGAGAGATGCAGTTGTTGCTGTCCAAAGACACAGGTAATAATTCCTTACTTGGAAATCTTCAAGTAATTGGAATTTGCGGTATGAGCGGAATAGGTAAAACAACCATCTCAAAAATCCTTTTCTCCCAACACTTTCCCTTGTATGACAGTGTTTGCTTCTTAGAAAATGTGAAAGAAGCATCACAAAACATAGAATCTTTACAACAGAAGATGCTTTCTGAGATACTAAAGGATGAAAACCAAACGAGGCTTAGTGACAAAAAGGCTTTTGTTGTACTTGATGATGTGGATAATGTAGAACAATTACAAGTGTTGTGTGAAGAGTTTAGATATGCAAGTCCAGAGAGTAAACTCATCATAACCACAAGAAACAAGGATTTGCTTAAACGAATAATGGTTGATGAAGAAGATGTCTATGAGGTTAAGACATGGAGCTTTGAAGAATCTCTAGAGCTTTTTTGCTTGAGTGCCTTCAAGAGCAAGCATCCCAAGAAAGGATACGAGGATCTCGCGGAAAGGGCGGTTGATTATACCGGTGGTGTTCCGTTAGCTTTGAAGGTTTTGGGTTCGAGTCTTGCCTACAGAAGCACTGAATTTTGGGAGAGCGAATTGGGTAAATTCGAGAACTATTCTTGTGACGCTATTCAAAAGGTGTTGCGAGTAAGCTTTGAGGGACTACATGATCTTGAAAAGAAAATATTTCTAGACATTGCATTCTTCTTCAAAGACGAGTGTAAAGATTTTGTGGAAAGGATACTGAATGCTTGCGGTTTCTATGCTACCGATGGGTTGAAGGCTCTTGAAGATAAAGCTCTCATAACCATTTTCAATGGCCACAAAATAAAAATGCACGATTTGGTTCAAGATTTCGGTTTGTGCATCGAAGATCCTGGAAAACGTAGCCGATTGAGGGACATTGATGAAATTTCTAATGCACTTGAATGCAAAAATAAGGGGAGTGATGCGGTCGAAGGTATAAAGCTAGATTTGTCACAAATTGATGATCTACAGTTAAATGCTAACGCATTTAGTGTGATGACTGATCTAAGATTTTTGAAATTGCATACCCCCTGTGGTAGGATTTCGGGTAACATGGACTATCCTCTAGCCCTTAATCAATTTTCTTCCGAGTTGAGGTATCTTGAGTGGAACGGATACCGCTTAAAGTCTCTTCCAGAAAGTTTTTGTGCTGCGAAACTCGTCGAAATTCGCATGGTCCGAAGCCACATAAGAGAGCTTTGGCATGGTGTTAAGGATCTTGTGAACTTAGAGGGAATTGATCTAAGTGAGTGCAAGTATTTAGAGAATCTTCCAGATCTGTCCAAGGCATCTAAACTGAAATGGTTGAATCTTTCTGATTGTGAGAGCTTGGTTGAGCTTCATCCATCTGTTTTGTCTCTTGACACGCTTGAAACTTTGATCTTCAATGGCTGCAAGAAACTCAAGAGCTTGAAGACTGAGAAGCATTTCAGATCTCTCAAGAAAGTCAGTGTGGAGGGCTGCATCAGTCTCAAGGAGTTCGCGCTGTCGTCCGATGCGATGGAGAGCTTGGAATTGAAGAATGCAGGAATAGAACAACTGCACTCGTCGATAGGGCGTTCGAGGAGCCTCAGACATCTGAATCTAGAAGGTTTGAGACTCCAGAATCTTCCAGATGAGTTATCATCCCTTACAAGCCTTGTGGAACTAAGAATCTCTGATTGCAAAGAGCTAGTTCTTGAAAAACAGAAATTGCAAACATGGTTTGAAGGCCTAAGATCATCTCTAACATTGCTGCATTTGAAGGATTGTTCAAACTTGCATGAGCTTCCTGAAAACATTAGCGTGTTGTCCAAGCTACGTGAGCTGAGACTAGACGGAAGCGGCCTAGAAACATTGCCTGAAAGCATCAAGCATCTTTCGCAGCTCGAAATCCTTTCCTTAGAGAATTGCTTGAGCCTCAAGCAACTGCCAGAGCTTCCAACAAGCATCAAAGAACTCGCAGCTGCTAACTGCGAGTCTTTGGTGAGAGTTTCCACTCTGAAGACTCTTGCAACCGCGATGACAGGCCGAGAGAAGTCCATCTCGTTCGAGAATTGCACGAAACTAGACGGATCTTCCCTCGGCTGGATCGCGGAAGCTGCAGAGTTATCATCCATGAACGCTGCTTTTCAAAACGTGTTTGTAAGAAGCAATGGCGCTAACGGTGACAGCTGTCACAACTACAACTTTGTGAAGGTTTGTTCACCTGGAAGCAGAGTCCCGGAGCAGTTCACATACCGGAGCAGAGAGTCCACTTTCAAAGTCAAAATTCCTTCACACTCAAACATTTTGGGAATGGTTTTGTGCGTAGTTGTTTCGGCGAGCGAAGGAATCAAGAACCACGGTGCTAGAATCTTGTGTCAGTGTTATGATGGTGATGGTAGAAAGGTGGGGTATGCTACTAGGTGGTGCCATGAAAAAGCTACCAAGAATTTGAATGGTGATCATGTTTTTGTTTGGTATGATGCACTTCACTTTGATAGCATTGTTAGAAGCCTTGAAGAAGAAGAAGAAATTAGTTTTGAGTTCTTTGTTACAAATGAATTGGGAGAACGTCATGTGTTGAATAATGTTCTTCCCAAGGAGTGTGGGGTGCGCTTGATTTTTGAGTCAGAGTTGCACAATCTCTTGAGGAATTTGGATTTGGATTTTGAGTCAAAGTGGAAGTTAGGGTTGGCCTTAGGTTCGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGGGTTGGCGTTAGGTTCGAGATTTGATTTGGACGATAATAGAAGAAAGGGGATATACAATATGAAGATGTTGTGGGTGAAAGATATGATTGGTTCCATGACTTGTTCGGCGGCTATGAGTACCTAA 3480 0.4224 MELFPSSPKKYDVFVSYKGGDTQINFISNLNSALTNAGIKIYIDSYLRTGDAIWPPLREAIENSSVALVIFTKGYASSKWCLEELVKILERRRREGMVVIPLFYNVDPCDVRNQNGTYGEAFAKHERCFLLDGKDKKGKEDAQKKLCQWRAALTEAANISGWYTRNNTNASEVIEKMVGDVLKVLELRFPEELKCRDLVGLDKILREMQLLLSKDTGNNSLLGNLQVIGICGMSGIGKTTISKILFSQHFPLYDSVCFLENVKEASQNIESLQQKMLSEILKDENQTRLSDKKAFVVLDDVDNVEQLQVLCEEFRYASPESKLIITTRNKDLLKRIMVDEEDVYEVKTWSFEESLELFCLSAFKSKHPKKGYEDLAERAVDYTGGVPLALKVLGSSLAYRSTEFWESELGKFENYSCDAIQKVLRVSFEGLHDLEKKIFLDIAFFFKDECKDFVERILNACGFYATDGLKALEDKALITIFNGHKIKMHDLVQDFGLCIEDPGKRSRLRDIDEISNALECKNKGSDAVEGIKLDLSQIDDLQLNANAFSVMTDLRFLKLHTPCGRISGNMDYPLALNQFSSELRYLEWNGYRLKSLPESFCAAKLVEIRMVRSHIRELWHGVKDLVNLEGIDLSECKYLENLPDLSKASKLKWLNLSDCESLVELHPSVLSLDTLETLIFNGCKKLKSLKTEKHFRSLKKVSVEGCISLKEFALSSDAMESLELKNAGIEQLHSSIGRSRSLRHLNLEGLRLQNLPDELSSLTSLVELRISDCKELVLEKQKLQTWFEGLRSSLTLLHLKDCSNLHELPENISVLSKLRELRLDGSGLETLPESIKHLSQLEILSLENCLSLKQLPELPTSIKELAAANCESLVRVSTLKTLATAMTGREKSISFENCTKLDGSSLGWIAEAAELSSMNAAFQNVFVRSNGANGDSCHNYNFVKVCSPGSRVPEQFTYRSRESTFKVKIPSHSNILGMVLCVVVSASEGIKNHGARILCQCYDGDGRKVGYATRWCHEKATKNLNGDHVFVWYDALHFDSIVRSLEEEEEISFEFFVTNELGERHVLNNVLPKECGVRLIFESELHNLLRNLDLDFESKWKLGLALGSELELELELELGLALGSRFDLDDNRRKGIYNMKMLWVKDMIGSMTCSAAMST 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181g00010 1159 Coils Coil 262 282 - -
Stsc181g00010 1159 Pfam C-JID domain 948 1085 IPR045344 -
Stsc181g00010 1159 Pfam NB-ARC domain 223 417 IPR002182 GO:0043531
Stsc181g00010 1159 Pfam TIR domain 10 199 IPR000157 GO:0007165
Stsc181g00010 1159 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 162 IPR035897 -
Stsc181g00010 1159 PRINTS Disease resistance protein signature 288 302 - -
Stsc181g00010 1159 PRINTS Disease resistance protein signature 383 397 - -
Stsc181g00010 1159 PRINTS Disease resistance protein signature 623 639 - -
Stsc181g00010 1159 PRINTS Disease resistance protein signature 227 242 - -
Stsc181g00010 1159 Gene3D - 187 343 IPR027417 -
Stsc181g00010 1159 Gene3D Ribonuclease Inhibitor 713 909 IPR032675 -
Stsc181g00010 1159 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 187 - -
Stsc181g00010 1159 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 713 IPR044974 GO:0006952
Stsc181g00010 1159 SUPERFAMILY L domain-like 488 877 - -
Stsc181g00010 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 442 IPR027417 -
Stsc181g00010 1159 SMART till_3 10 159 IPR000157 GO:0007165
Stsc181g00010 1159 ProSiteProfiles TIR domain profile. 9 185 IPR000157 GO:0007165
Stsc181g00010 1159 Gene3D - 5 186 IPR035897 -
Stsc181g00010 1159 Gene3D Ribonuclease Inhibitor 508 712 IPR032675 -
Stsc181g00010 1159 Gene3D - 350 432 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181g00010 Stsc-Chr181 57241 62689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181g00010 793 933 WRKY Transcription Factor Family AT4G12020 28.276 5.43e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181g00010 - - ahf:112709325 1853.18