Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181g00009 ATGAATTCATCAGAGAAGGAAGTAGTAGTAGTAGAAGAAAGGAATAATAATAATGATGAAGAAGTTGAAGTAGAAGAAGAGGAAGAAGAAGAAGAAGCACAAGATCATCGCCATGGAACTAATAAAAAGTCATATGATTGCACATTCTGTAGGAGAGGCTTCACAAATGCTCAAGCTTTAGGGGGTCACATGAATATTCACAGAAAAGATAGGGTCAAGAACAAGAATCATCTTCTTCACTCCTCAAATAATCATCAACACCGAGAATTCTTGGCCCTAAAATTCTCATCATCATCATCATCAACCCATACTTACTCTTACTCAGCTTTTGACTCTCAAAGGAACTATGCTGATCATATGTATTTTCATCCACCGCCATCGCCAGCACCACCGCCGCCACCGGCACCTTATAATTATGTAATTAGGAACCAGCAATATGCACCACCGCCATTTCAATTAGATCAATTTCATGGCTCAATGATGATGAATCTCAAGAAGCAAGAGCTTCAAGGTGCCAATTTGAGTCTCCAAATTTGCCCTACTGCCGGTGATGATGATGGACATGTTTCTAGAAGAAGAAATCAGCAGAAAGATAATAAAAGTGATGAAGTGGACTTGGAACTCAGACTTGGCCACCATGATCCTTAA 648 0.3966 MNSSEKEVVVVEERNNNNDEEVEVEEEEEEEEAQDHRHGTNKKSYDCTFCRRGFTNAQALGGHMNIHRKDRVKNKNHLLHSSNNHQHREFLALKFSSSSSSTHTYSYSAFDSQRNYADHMYFHPPPSPAPPPPPAPYNYVIRNQQYAPPPFQLDQFHGSMMMNLKKQELQGANLSLQICPTAGDDDGHVSRRRNQQKDNKSDEVDLELRLGHHDP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181g00009 215 Coils Coil 10 37 - -
Stsc181g00009 215 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Stsc181g00009 215 MobiDBLite consensus disorder prediction 1 42 - -
Stsc181g00009 215 SUPERFAMILY beta-beta-alpha zinc fingers 40 71 IPR036236 -
Stsc181g00009 215 MobiDBLite consensus disorder prediction 177 215 - -
Stsc181g00009 215 MobiDBLite consensus disorder prediction 1 17 - -
Stsc181g00009 215 Gene3D Classic Zinc Finger 26 104 - -
Stsc181g00009 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Stsc181g00009 215 MobiDBLite consensus disorder prediction 18 32 - -
Stsc181g00009 215 MobiDBLite consensus disorder prediction 185 215 - -
Stsc181g00009 215 PANTHER OS07G0101800 PROTEIN 27 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181g00009 Stsc-Chr181 52138 52968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181g00009 45 72 C2H2 Transcription Factor Family AT5G43540 85.714 1.58e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181g00009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181g00009 - - aip:107615854 246.514