Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181997g00002 ATGTCTTCAGAGGAGCTGGACCTGCTGCTTTCCCTGCAGGATCAGGAGAAGGTTCTTGAAACCCCTCTCGCTTCACCTGGATTCGCCGGTTACCTCTCCGACGATGACCGCGACAACGGAGAAAAGGCTGATATGTCAGTGTTTCGAGATGCTGTTCAGGATTGCCTTCAGTATCAACCTAACCCTAACCCTAACTCTAACCCTAAATCCAATACCAAGCCTCTTCTCCACAACGACGCCGATGTTGAGAAGTTTTCAGGTCTTCGAATAAGGAATCAATTGCTGACCTCTAACGAGATTAGAGAAAGCTTCTCAGACATTCGTTTTGTTCGCTTATCCGTTATCAAGAATTTGTTATTTGGGGATACCTTTTCTGGAAGTTGGGTGACTGTCGGAGTGTTGACTGAGAAGGGGCCTCCGAGGATGAGTTCAACAGGGAAGACTTATTGCATTTGGAAACTCGGTTGTTTGGATGAGAATACTGTTTATCTATTCCTCTTTGGTGATGCTTATCAGAGGAACTCCACAGAGCAAGTAGGAACCGTCTTTGCACTGTTCAATTCTACTGTCCGCAAAGATCCCAAGGGTAACGGTTTTTCGCTGAGTATATTTTCCACTGGTCAAATTTTGAAGATGGGCACCTCTGCTGACTATGGAGTTTGCAAAGGCAAAAGAGCAGATGGCATGGCTTGTACCCTTGTCATAAATAAGCGTTCTGGAGCATATTGTAAATACCATAAATCAAAAGCATCGGGGAAATATTCTACAACGAGAACTGAACTCAAGGGAGGAAACTTAAACACAGCATTTAGGTCTAGGGATTATCTCAAGTCAGAAGGAATATACTTAGTTGACCCTCTTGCTGAAAAAAGAAACTTGAAAAAGTCTCAGCCAGTGAAATTGTTGTCTGTGGATGCACTCAGAAACGCATTGAGCAAAGCAGGAAAAGTAACAACTAATACACACTCTCAGGGGATTAGATTTCTTTCTGAGGTCACAGCTAAGTCAGGCCCAAAATTGATGAACAAAGGTACAAAGGCTCCAAATGAACGAAGCAATGGCACAGAGAAGAGGAAATCATCTTGTGTGAATGTGATGGGATCTTCTCCAGTCATAAGAAACCAACATTTGAATGCTAAAAGAGCAAGAACTGAGCAAATCGAAGTTGATAAAACAATTAAGAGTACTGGGAAGTTTATTGAATTGGATTTTGTTAGTTCTGATGAGGATATATGA 1236 0.4239 MSSEELDLLLSLQDQEKVLETPLASPGFAGYLSDDDRDNGEKADMSVFRDAVQDCLQYQPNPNPNSNPKSNTKPLLHNDADVEKFSGLRIRNQLLTSNEIRESFSDIRFVRLSVIKNLLFGDTFSGSWVTVGVLTEKGPPRMSSTGKTYCIWKLGCLDENTVYLFLFGDAYQRNSTEQVGTVFALFNSTVRKDPKGNGFSLSIFSTGQILKMGTSADYGVCKGKRADGMACTLVINKRSGAYCKYHKSKASGKYSTTRTELKGGNLNTAFRSRDYLKSEGIYLVDPLAEKRNLKKSQPVKLLSVDALRNALSKAGKVTTNTHSQGIRFLSEVTAKSGPKLMNKGTKAPNERSNGTEKRKSSCVNVMGSSPVIRNQHLNAKRARTEQIEVDKTIKSTGKFIELDFVSSDEDI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181997g00002 411 PANTHER PROTEIN MCM10 HOMOLOG 38 386 IPR040184 GO:0003690|GO:0003697|GO:0006270
Stsc181997g00002 411 Gene3D - 75 247 IPR012340 -
Stsc181997g00002 411 MobiDBLite consensus disorder prediction 338 361 - -
Stsc181997g00002 411 FunFam DNA replication licensing factor mcm10 75 248 - -
Stsc181997g00002 411 Pfam Primase zinc finger 213 258 IPR015408 GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181997g00002 Stsc-Chr181997 10825 14107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181997g00002 17 410 Core DNA Replication Machinery Family AT2G20980 54.229 1.32e-135 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181997g00002 K10736 - gmx:100527758 528.094