Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181996g00005 ATGGCCGACGATGGAGAGGCGTCGTCGTCATCCTTATCAGAAGGCATGTATGATGCTTTTCTCAGCTTTAGAAGCGAAGATACAAGGTACCTCTTCACAGACCATCTCTACCATAGACTGGCAAAAATGGAAAAGCTAAAAGTGTTCAGAGATGAACCGGGTCTGGAAATGAATGACCAAATCAAAGCTACTCTGATGGAAGCCATTAAAAGATCAAGGATGTTCATTGTTGTGGTAAGTGAAAACTATATATGTTCCTCATGGTGCCTCATGGAGCTAGATGAGATGCTCAAGTACTCCAACAATGGAACAAAACGCCCAATTTTCCCTATTTTTTATCACGTGGAGCCCAAAGAAGTGAGACATCAGATTAGCAACAAATCTAAGAAAGCCATGAAGGATCATGAAAGAAGAGTAGGCATAAACAAGGTGAAAGAGTGGAAGTCAGCTCTATCTACACTTTGTGGGCTAAGAGGACAACACATTGTTGTGAATAAAGGGTATGAAACTCAGGTGATGGGAGAGATTGCTGAAAAGGTCTTAGCAAAACATCGGGAGATCAAGCAACTATTGAATAGATTTGATTCTGAATTTGAAGCGGTGGAATCACTTTTGAACCTTGAATCTCGTGATACTCTTCTGATGGTGGGAATTTATGAAGAAGATGCTAAAATAGACAAAACAAAATTTGCTTTTGAGCTATACTATAAGATCAAGTATGAGTTCAAAGCGACAAGCTTTCTTCTTGATGTGAGTAGAAAATTAAGGGAAAATGATAATGGCTTGGAAAATCTGCAAAAGGAGCTTATTTCTGATATGGGTGTGGGGGTAAGCACCATGATGGGTAGCACATCTAGTGGATCCTCAGAAATTTTAAAGCAGAAGTTGCGGCATAAAAGAGTGCTACTGGTTCTGGATGGTGTTGATACTCGAGCATTTACAGTTGCTGGCAGGAAGAGGATCGTCATAACAACAGAAGTTAAAGATCTCTTACATGAGATAGATGGTGTTGAGATTAGGACACGTTGCATTCGTGAAGATGAATTCGACGGAAACAGAGGAAGCTTTACTATGATGGAAGAAAATATTGTGGGATTGAAGAAAGACTTCCATAAGGTAATAAATCAACTCAAGGATAAAGATTCTCCTGGGAATGTGGTTTTCGTTGTTGGCATGGGTGGGTCGGGCAAGACTACCCTTGCTCAAAAGGTCTACAATAGCAACGAGGCCAGAAAGCTATTTCCTTGTCGTGCCTGGGCAACAATTTCCCAAAAGCCCATGTTGATCCAAGTTTTTAGAAATCTTCTCAACTGTTTGAAGGTACCCATTACTAAATCTGAAAATTCAAGTGAAGAGGAGTTGAAGAAGGAGGTGAGAAAATGTTTGATTGGGAAAAAGTATTTGGCAGTCCTTGACGATGTTTGGGACACTGATAACCCGTGGTTTTCTCTAAGGGATTGTTTCCCAAGAAACAAGAATGGTAGCATGATACTAGTAACTACCCGCGATCATCGAGTGGCCAACGTTTTAGAGTCAAAGAATCCTCATCTCACGGTTTCCCTTATGAATAAAAAAGAAAGTTGGAAACTGTTTTGCAATATGGTGTTCTACAGAACAATGTGTCCTCCAGAACTAGAAGGTATTGGTAGATCAATTGCTGAAAGTTGTAACGGTTTACCATTGCTTATCAAAACCACAGTCGGGATTGTTGCCAAGAGGGAGAGGTCAGTGGAGGCATGGGAAGAAATCAAGAAGCTGTTCCCTTATTGGTCTATTGCTGAGGACAAGGAATTGAAGCTTAGCTACGATGATCTGTCTGAGCAAATGAAGCCATGTTTCCTATATCTTGGTGTGTTTCCTGAAGATGAAGAGATTTTGGTGAGAGACTTAATCTGTATGTGGATTGCAGAAGATTTCATAAAGCCAATAATCCAAAGTGGAAGATCAAAGATAGAACCTGAAGACATTGGGGAGGAATACCTGAAGGAGCTAGAGGATCGTAACTTGGTACAAGTGGCGAGCAGGAGGAGTGATGGCAAAGGCGTGAAAACAGTTAAGATCCATGATGTCATCCGAGAACTGAGCATATCAATGAGTAACAACAAAGCTTTTAGTTTGTTCTTTCCAGAGTATATACGAGGATGGTATGTATGTTTGGTAACACGACGTGATCAATCAAGAACTTGTTCCTTGTTCCTTTATGGAAGTCTGCCCTAG 2217 0.4073 MADDGEASSSSLSEGMYDAFLSFRSEDTRYLFTDHLYHRLAKMEKLKVFRDEPGLEMNDQIKATLMEAIKRSRMFIVVVSENYICSSWCLMELDEMLKYSNNGTKRPIFPIFYHVEPKEVRHQISNKSKKAMKDHERRVGINKVKEWKSALSTLCGLRGQHIVVNKGYETQVMGEIAEKVLAKHREIKQLLNRFDSEFEAVESLLNLESRDTLLMVGIYEEDAKIDKTKFAFELYYKIKYEFKATSFLLDVSRKLRENDNGLENLQKELISDMGVGVSTMMGSTSSGSSEILKQKLRHKRVLLVLDGVDTRAFTVAGRKRIVITTEVKDLLHEIDGVEIRTRCIREDEFDGNRGSFTMMEENIVGLKKDFHKVINQLKDKDSPGNVVFVVGMGGSGKTTLAQKVYNSNEARKLFPCRAWATISQKPMLIQVFRNLLNCLKVPITKSENSSEEELKKEVRKCLIGKKYLAVLDDVWDTDNPWFSLRDCFPRNKNGSMILVTTRDHRVANVLESKNPHLTVSLMNKKESWKLFCNMVFYRTMCPPELEGIGRSIAESCNGLPLLIKTTVGIVAKRERSVEAWEEIKKLFPYWSIAEDKELKLSYDDLSEQMKPCFLYLGVFPEDEEILVRDLICMWIAEDFIKPIIQSGRSKIEPEDIGEEYLKELEDRNLVQVASRRSDGKGVKTVKIHDVIRELSISMSNNKAFSLFFPEYIRGWYVCLVTRRDQSRTCSLFLYGSLP 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181996g00005 738 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 363 694 IPR044974 GO:0006952
Stsc181996g00005 738 Gene3D - 9 185 IPR035897 -
Stsc181996g00005 738 Gene3D - 351 520 IPR027417 -
Stsc181996g00005 738 Pfam NB-ARC domain 368 610 IPR002182 GO:0043531
Stsc181996g00005 738 Gene3D - 521 601 IPR042197 -
Stsc181996g00005 738 PRINTS Disease resistance protein signature 461 475 - -
Stsc181996g00005 738 PRINTS Disease resistance protein signature 386 401 - -
Stsc181996g00005 738 PRINTS Disease resistance protein signature 556 570 - -
Stsc181996g00005 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 336 IPR027417 -
Stsc181996g00005 738 Gene3D - 602 697 IPR036388 -
Stsc181996g00005 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 616 IPR027417 -
Stsc181996g00005 738 SMART till_3 16 157 IPR000157 GO:0007165
Stsc181996g00005 738 FunFam Probable disease resistance protein At1g63360 602 697 - -
Stsc181996g00005 738 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Stsc181996g00005 738 Gene3D - 186 340 IPR027417 -
Stsc181996g00005 738 FunFam Probable disease resistance protein At1g61300 351 515 - -
Stsc181996g00005 738 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 154 IPR035897 -
Stsc181996g00005 738 Pfam TIR domain 17 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181996g00005 Stsc-Chr181996 24128 26741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181996g00005 66 309 WRKY Transcription Factor Family AT4G12020 25.703 1.44e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181996g00005 - - aip:107637424 696.427