Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181991g00001 ATGTGCATCACCACTTGGCATGCACTTCCACAATTGCAATTAGGCGACAACCACTGCCATCCTTTGCTCCGCGATCCCACCTCGTCGCAAAACCCAACAAGACCCGCAAGGAGTACTGCAAAATATAAGCCCAAAAGCTATACGCTGAGGCGGGTTTTCTTCGAATACCTAGACTTTTGGATTGAACCCCCTCTTCTCACTCCCTCCTCCGTTTCCGTCATTTTGGAGTCTACCCGCTCAAATACCCTAGCCCCTTCTCTCCCTCTCCGTCACTCAATCACTCGTGTTTTCACTATGAACTGCTCCATTTCCGGCGAGGTGCCGGAAGACCCAGTGGTGTCTAAGAAATCAGGTCTTCTTTTCGAGAAGCGGTTAATCGAGACGCACATAGCGGATTTTGGGAAATGTCCAATAACTGGAGAACCCCTCACTTTGGATGATCTTGTACCAATCAAAACAGGCAAGATAGTGAAGCCCAGACCAGTGCAGGCGGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGACGGGTTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGGCAAGAGCTAAGTCATGCTTTATATCAGCATGATGCTGCATGTCGAGTGATTGCAAGACTTAAAAAGGAACGAGATGAAGCTAGGTCATTGCTAACACAAGCAGACAGACCGTTCCCAGTGTCAGCAAATGCCATACTGGCAAATGTCTCTGGATTGAGCAATGGGAAAAGAGCTGCTGAGGATGATGAAATGGCACATGGTGGAAAGAAAATGCATCCTGGAATAACTTCTGCAATAATTTCTGAGCTAACTGACTGTAATGCTGCTCTTTCCCAGCAGAGGAAAAAGCGACAGATTCCTGCAACTTTGGCCCCTGTTGAGTCTATAGGGGAATATACCCAGATATCTAGCCACCCCTTCCACAAAACAAACAAACCAGGCATTATATCTCTTGACATTCTGCATTCGAAGGATTTAATTGCAACTGGCGGTATTGATACAAATGCTGTTATTTTTGACAGACCATCAGGACAAATATTATCTACACTGAGTGGTCATTCTAAAAAGGTTACCAGCGTAAAGTTTGTAGCTCAGGGCGAAGTTTTATTAACTGGTTCAGCAGATAAGACTGTTCGTGCGTGGCAACGCTCAGATGATGATAACTATAACTGCAAACACATCCTGAGGGATCATACGGCGGAGGTAGAAGCTGTCACTGTCCATGCCACAAATAATTACTTCGTGACTGCTTCACTTGATGGAACTTGGTGCTTTTATGATCTATCCTCAGGAACATGTCTGACCCAGGTTTCAGACACTTCAGGTTCTTCTGAAGGCTATACATCTGCAGCTTTTCATCCAGATGGGCTCATTCTTGGAACTGGCACGACAGATGCTCTTGTTAAGATCTGGGATGTAAAAAATCAGGAGAGTGTTGCTAAATTTAAGGGACATGCAGGACCAGTGACTGCTATATCTTTCTCTGAGAATGGGTACTTCCTTGCGACTGCGGCTCATGATGGTGTAAAGCTTTGGGATTTACGTAAATTAAAGAACTTCCGAAATTTTGCTCCATATGACTCAGAAACTCCAACAAATTCAGTTGACTTCGATCACAGTGGATCTTACCTTGCAGTTGCAGGCTCTGATATCAGGATTTACCAAGTTGCGAATGTGAAATCTGAATGGAACTGTATCAAAACGTTCCCTGATTTATCTGGAACAGGGAAAGCCACCTGTGTAAAATTTGGTGCAGATGCAAAATATGTAGCAGTGGGATCAATGGACCGGAATCTTCGAATATTTGGCCTACCCATTGAAGATGCTACAACCAACGAGTCTTAG 1872 0.4471 MCITTWHALPQLQLGDNHCHPLLRDPTSSQNPTRPARSTAKYKPKSYTLRRVFFEYLDFWIEPPLLTPSSVSVILESTRSNTLAPSLPLRHSITRVFTMNCSISGEVPEDPVVSKKSGLLFEKRLIETHIADFGKCPITGEPLTLDDLVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLTQADRPFPVSANAILANVSGLSNGKRAAEDDEMAHGGKKMHPGITSAIISELTDCNAALSQQRKKRQIPATLAPVESIGEYTQISSHPFHKTNKPGIISLDILHSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGEVLLTGSADKTVRAWQRSDDDNYNCKHILRDHTAEVEAVTVHATNNYFVTASLDGTWCFYDLSSGTCLTQVSDTSGSSEGYTSAAFHPDGLILGTGTTDALVKIWDVKNQESVAKFKGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVDFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGADAKYVAVGSMDRNLRIFGLPIEDATTNES 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181991g00001 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 391 - -
Stsc181991g00001 623 SMART WD40_4 352 391 IPR001680 GO:0005515
Stsc181991g00001 623 SMART WD40_4 525 564 IPR001680 GO:0005515
Stsc181991g00001 623 SMART WD40_4 571 612 IPR001680 GO:0005515
Stsc181991g00001 623 SMART WD40_4 439 481 IPR001680 GO:0005515
Stsc181991g00001 623 SMART WD40_4 307 349 IPR001680 GO:0005515
Stsc181991g00001 623 SMART WD40_4 397 436 IPR001680 GO:0005515
Stsc181991g00001 623 SMART WD40_4 484 522 IPR001680 GO:0005515
Stsc181991g00001 623 FunFam pre-mRNA-processing factor 19 296 613 - -
Stsc181991g00001 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 391 IPR001680 GO:0005515
Stsc181991g00001 623 SUPERFAMILY RING/U-box 99 151 - -
Stsc181991g00001 623 CDD RING-Ubox_PRP19 99 152 - -
Stsc181991g00001 623 Gene3D - 299 613 IPR015943 GO:0005515
Stsc181991g00001 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 490 IPR001680 GO:0005515
Stsc181991g00001 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 531 IPR001680 GO:0005515
Stsc181991g00001 623 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Stsc181991g00001 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 445 IPR001680 GO:0005515
Stsc181991g00001 623 PANTHER PRE-MRNA-PROCESSING FACTOR 19 98 613 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Stsc181991g00001 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 491 524 - -
Stsc181991g00001 623 CDD WD40 323 611 - -
Stsc181991g00001 623 MobiDBLite consensus disorder prediction 23 37 - -
Stsc181991g00001 623 Pfam Prp19/Pso4-like 164 228 IPR013915 -
Stsc181991g00001 623 MobiDBLite consensus disorder prediction 21 41 - -
Stsc181991g00001 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 158 IPR013083 -
Stsc181991g00001 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 484 - -
Stsc181991g00001 623 Pfam WD domain, G-beta repeat 353 390 IPR001680 GO:0005515
Stsc181991g00001 623 Pfam WD domain, G-beta repeat 399 436 IPR001680 GO:0005515
Stsc181991g00001 623 Pfam WD domain, G-beta repeat 572 611 IPR001680 GO:0005515
Stsc181991g00001 623 Pfam WD domain, G-beta repeat 487 522 IPR001680 GO:0005515
Stsc181991g00001 623 ProSiteProfiles U-box domain profile. 94 168 IPR003613 GO:0004842|GO:0016567
Stsc181991g00001 623 SMART Ubox_2 98 164 IPR003613 GO:0004842|GO:0016567
Stsc181991g00001 623 FunFam Pre-mRNA-processing factor 19, putative 99 156 - -
Stsc181991g00001 623 SUPERFAMILY WD40 repeat-like 320 611 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181991g00001 Stsc-Chr181991 15025 26483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181991g00001 99 623 U-box Gene Family AT1G04510 72.000 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181991g00001 K10599 - gmx:100527039 940.258