Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181981g00001 ATGGAGGCATATACCCAGATATCTAGCCACTCCTTCCACAAAACAAACAAACCAGGCATTATATCTCTTGACATTCTTTATTCTAAGGATTTAATTGCAACTGGCGGTATTGATACAAATGCTGTTATTTTTCACAGACCATCAGGACAAATATTGACTGTTCGTGTGTGGCAAGGCTCAGACGATGATACTTATAACTGCAAACACATCCTGAGGGATCATACCGCGGAGGTAGAAGATGTCACTGTCCATGCCACTAATAATTACTTTGCGACTGCTTCACTTGATGGAACTTGGTGCTTTTATGATCTATCCTCAGGAACATGTCTGACCCAGGTTTCAGACACTTCAGGTTCTTCTGAAGGCTATACCTCTGCAGCTTTTCATCCAGATGGGCTAATTCTTGGAACTGGCACGACAGATGCTCTTATTAAGATCTGGGATTTAAAATGTCCGGCATATGTTGCTAAATTTGAAGGACATGCAGGACCAGTGACTGCCTTATCTTTCTCTGAGAATGGGTACTTCCGAAATTTTGCTCCATATGACTCAGAAACTCCAACAAATTCAGGTATTTATTTTCTCCCAATGTTGACATTTGCCATATCAATAATTCTACGTGAACAAATGGTTTTGAACAACCAAGTCTAA 651 0.404 MEAYTQISSHSFHKTNKPGIISLDILYSKDLIATGGIDTNAVIFHRPSGQILTVRVWQGSDDDTYNCKHILRDHTAEVEDVTVHATNNYFATASLDGTWCFYDLSSGTCLTQVSDTSGSSEGYTSAAFHPDGLILGTGTTDALIKIWDLKCPAYVAKFEGHAGPVTALSFSENGYFRNFAPYDSETPTNSGIYFLPMLTFAISIILREQMVLNNQV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181981g00001 216 SMART WD40_4 64 103 IPR001680 GO:0005515
Stsc181981g00001 216 SMART WD40_4 106 148 IPR001680 GO:0005515
Stsc181981g00001 216 SMART WD40_4 5 45 IPR001680 GO:0005515
Stsc181981g00001 216 Pfam WD domain, G-beta repeat 66 103 IPR001680 GO:0005515
Stsc181981g00001 216 Pfam WD domain, G-beta repeat 124 148 IPR001680 GO:0005515
Stsc181981g00001 216 ProSitePatterns Trp-Asp (WD) repeats signature. 135 149 IPR019775 -
Stsc181981g00001 216 Gene3D - 1 180 IPR015943 GO:0005515
Stsc181981g00001 216 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 150 IPR001680 GO:0005515
Stsc181981g00001 216 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 150 - -
Stsc181981g00001 216 ProSiteProfiles Trp-Asp (WD) repeats profile. 71 112 IPR001680 GO:0005515
Stsc181981g00001 216 PANTHER PRE-MRNA-PROCESSING FACTOR 19 2 176 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Stsc181981g00001 216 SUPERFAMILY WD40 repeat-like 15 181 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181981g00001 Stsc-Chr181981 15685 17927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181981g00001 1 183 U-box Gene Family AT1G04510 57.547 8.99e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181981g00001 K10599 - gmx:100800213 321.242