Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181979g00001 ATGGATGACTATTCTGGAAAAAGAGCAATTGATGGGGTGGTAGTCCCTAGAAAAGGGATGGGCCATTTGTTTAGAGATTCTGCAAATACTAGAGATAGAAATGGTCAAGTGTGCAGCCGTCTTGGTTGCAGTAGTAAAGTCAACTCCACTAAAGGTTCTCAAATTGGTTCTTCAGAAAAGGGTAAATCTTTGAGAACTTTTCGAGCCACTTCAGGTGGCAAGGAAGCAATTGGAAGTTCCTCCAGAACTTTCACTGGGAATAACAACTCAGGAAAGTCGCATACAAAGCCTCGGAAGACATTATCCTCTCAACTAGAGACGGATTCATCAGAAACTAGTAGCGTACATGATGAGCCAGAAGTTGTCTCTCCACCTGAAAACTTTCGGAGAGTGCCTCAAGCAGAAGTGGAAAATGTAGGATCCAGTTGTGTCGTGCAGATGGAAGTAGGGAGCTCTAGTGTAGCATCATCTAATACAGGATCTCGGAGGAATTTCCATCCAAAGCCTGGTTTGCGTGGTCAAGAAACAAAAAGCGCTGTTGCAGCAACACGACCCGGGACCAGTAGGTACGGATTAAGAAACCTCAGATGCAACTCTATATCCGATGTCGTCCCTGCTGGCTTTCCACCAACAGACTCAGCCAATAATAGAAGAAAGGATACGGTAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCAACAGCTAGAGGGAAGAAGATCAATGGTTCTTCATTAGAAGTACGGAATTCTGGTCCTAGAAATGGTATATCCATCTCTGATTCAAGAAGACCCAGAAATACGCCTTCGAATAATAGGGACAGGCCAGACAGCAATCTAATGTCAGTCAGAACAAGGAGGCCGACTAATGGTAATGGGAGGGGAAGACTTTCTAACCAAAGTAATGCTAATCCCGTGGCATCAAATGAGCCTGTTGTCATGATACCTACTTTGCCTCATTCGGGTGATCATAATGCTCCTGGCGGTGTATTGCATCTTACTTCTTTGGAGTCTCCTTTAAGCCGTCCTGACTCTTACAGTAGACCTGGTAGTAGCAGCGATGAACTTTATGGTATTATGCCTATGTCTCCCACGGAATATGGCATCACTCATTCTCTTATAAATCGGGATAGCTTTCGGCGACGCTCTAACATGGATGGCATTGCAGAGCAAATTCTTTTACTTGAGTCAAACTTGCTCCTCACTGGACTAAACTTCTATGATCAACATAGAGACATGCGGTTGGACATTGATAACATGTCATATGAGGAACTATTAGCTTTGGAAGAGAGGATGGGTTCTGTGAGCACAGCACTAACAGAGGAAGCATTATCAGAGTGCCTAAAGAGAAGTATCTTCCAATCCTTACCTTCAGTTGATGTGACTGAGACCTGCAATGGGAATAAGAATAAGGACGATACCAAATGCAGCATCTGCCAGGAGGAATATATGGTTGGAGATGAGGTGGGGAATCTGCAATGTCAGCATATGTACCATGTGGTTTGCATACAACAATGGCTGAGACTCAAGAACTGGTGCCCTATTTGTAAATCATCAGTGGCAAAGTCATCGACCCCGTCTCTGCCGCCTTCGTCGTCACCTTCATCCCATTGA 1611 0.4432 MDDYSGKRAIDGVVVPRKGMGHLFRDSANTRDRNGQVCSRLGCSSKVNSTKGSQIGSSEKGKSLRTFRATSGGKEAIGSSSRTFTGNNNSGKSHTKPRKTLSSQLETDSSETSSVHDEPEVVSPPENFRRVPQAEVENVGSSCVVQMEVGSSSVASSNTGSRRNFHPKPGLRGQETKSAVAATRPGTSRYGLRNLRCNSISDVVPAGFPPTDSANNRRKDTVKKRNCEGESSSTARGKKINGSSLEVRNSGPRNGISISDSRRPRNTPSNNRDRPDSNLMSVRTRRPTNGNGRGRLSNQSNANPVASNEPVVMIPTLPHSGDHNAPGGVLHLTSLESPLSRPDSYSRPGSSSDELYGIMPMSPTEYGITHSLINRDSFRRRSNMDGIAEQILLLESNLLLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRSIFQSLPSVDVTETCNGNKNKDDTKCSICQEEYMVGDEVGNLQCQHMYHVVCIQQWLRLKNWCPICKSSVAKSSTPSLPPSSSPSSH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181979g00001 536 Pfam Ring finger domain 474 516 IPR001841 -
Stsc181979g00001 536 MobiDBLite consensus disorder prediction 24 130 - -
Stsc181979g00001 536 SUPERFAMILY RING/U-box 468 521 - -
Stsc181979g00001 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 73 520 IPR045191 GO:0061630
Stsc181979g00001 536 ProSiteProfiles Zinc finger RING-type profile. 475 516 IPR001841 -
Stsc181979g00001 536 SMART ring_2 475 515 IPR001841 -
Stsc181979g00001 536 MobiDBLite consensus disorder prediction 152 357 - -
Stsc181979g00001 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 522 IPR013083 -
Stsc181979g00001 536 MobiDBLite consensus disorder prediction 337 351 - -
Stsc181979g00001 536 MobiDBLite consensus disorder prediction 73 110 - -
Stsc181979g00001 536 MobiDBLite consensus disorder prediction 216 232 - -
Stsc181979g00001 536 MobiDBLite consensus disorder prediction 233 307 - -
Stsc181979g00001 536 MobiDBLite consensus disorder prediction 30 65 - -
Stsc181979g00001 536 FunFam E3 ubiquitin-protein ligase arkadia 435 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181979g00001 Stsc-Chr181979 4251 8774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181979g00001 377 522 C3H Transcription Factor Family AT2G15530 41.096 2.18e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181979g00001 - - gmx:100819874 682.174