Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181978g00005 ATGGAGTTCGAGGAAGATGTACAAGAGTTCACCATGCCCCCACCACCGAGTTACGCTGACTCAGTTCCCAACCCTTCCCGTGTCAAAATGCCCACTCACCCACCTCCATCACCACCCATGGCACGAAACAGCGGAAAGGGGAGGTACAGGGAGTGTCTCAAGAACCACGCGCTCGCCCTCGGAGGCCACGCGCTTGACGGCTGCGGCGAGTTCATGCCTGCCGGAGCTGATGGAACCCTCGACGCACTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAAATCGTCGGAGGAGACCCTTTCTTGGTACCTCACCACCACCACCACAACCCTTTCCATAACCATCTCCACCACCAAGCATTTCCGCAATTCGCGGCATGTTACCGTGGTCAGGGAGCTGGATACCTGCAGGTGTCGGGACATCAAAGAGGAGGAGGCGGTACCCCGACTCTGGCCCTGCCGTCGATCTCAGGTGGCGGCGGCGGTACGACACAGAGCACGAGGGAGGATCATGAGGATGGTTCGGAACCGAGTGGTGGAGGTGTAGGTTCATCTTCGAAGAAGAGGTTCAGAACGAAGTTCAGTGCGGAGCAGAAGGAGAAGATGGTGGTGTTCGCGAAGAGCATAGGGTGGAAGCTTCAGAAGCATGATGAGGTGGCGGTTCAGGAGTTCTGCAATGAGATTGGAGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACCACAAGAACACCCTCGCTATCAAGAAGCCCTAG 768 0.569 MEFEEDVQEFTMPPPPSYADSVPNPSRVKMPTHPPPSPPMARNSGKGRYRECLKNHALALGGHALDGCGEFMPAGADGTLDALKCAACNCHRNFHRKEIVGGDPFLVPHHHHHNPFHNHLHHQAFPQFAACYRGQGAGYLQVSGHQRGGGGTPTLALPSISGGGGGTTQSTREDHEDGSEPSGGGVGSSSKKRFRTKFSAEQKEKMVVFAKSIGWKLQKHDEVAVQEFCNEIGVKRHVLKVWMHNHKNTLAIKKP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181978g00005 255 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 250 - -
Stsc181978g00005 255 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 48 99 IPR006456 -
Stsc181978g00005 255 NCBIfam homeobox domain, ZF-HD class 191 248 IPR006455 -
Stsc181978g00005 255 FunFam Zinc-finger homeodomain protein 2 180 252 - -
Stsc181978g00005 255 Gene3D - 176 252 - -
Stsc181978g00005 255 SUPERFAMILY Homeodomain-like 179 249 IPR009057 -
Stsc181978g00005 255 Pfam ZF-HD protein dimerisation region 48 99 IPR006456 -
Stsc181978g00005 255 MobiDBLite consensus disorder prediction 143 194 - -
Stsc181978g00005 255 MobiDBLite consensus disorder prediction 1 46 - -
Stsc181978g00005 255 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 98 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181978g00005 Stsc-Chr181978 21101 21868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181978g00005 45 250 ZF-HD Transcription Factor Family AT4G24660 49.038 7.25e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc181978g00005 ZF-HD_dimer 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181978g00005 - - gmx:100798992 254.218