Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181977g00002 ATGTATTATGTGAACGATAATTCATGTATTATGGATGCTGTGCTTCTTAAATCTGTAACAAGGGTCAATCAATTGAAGGAGCTGGCACAACTGTTAGATGCAGAAATATTACCCTTGGTTGTTAGCATTTCTGGGAGAGTCAGCTCTGAAACCCCAATTCACTGCGAGTTCAGTGGTTTAAGAGGAGTAATAGTTGAAGAAACGGCAGAGCAACATTTTCTGAAACACAATGATGCTGGTTCATGGATACAAGATTCTGCTTTAATGCTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGAAGTGACCGCGTGCATGTGGTAGGAGCCCGCGGTGCCACAGGATTTGTATTACCTGTTGCAAGTGAGGTTTTTGAAGAGTCCGGTAGGTCACTTGTACGTGGTACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGAGTAAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTCGTTGGTGAGGCTGCTAAAGATGACATTGGGACCATTCGAGTTCAGCGACCCCACAAAGGGCCATTTTACGTCTCTCCCAAAACACTCGATCAACTGATTGCAAATCTGGGGAAATGGGCAAGGTGGTATAAATATGCGTCTATGGGCTTTACACTATTTGGTGCTTACCTAATAGCTAAGCATGCTATTCGGTTCATCTTGGAAAGACGGCGTCGTTGTGAACTGCAAAAAAGGGTTCTTGCGGCCGCTGCTAAGAGGCAAGGACAAGATAATGAAGGTGAAAAAGCCGACACCTTACCGGATGGCACTAAAAGGGACCGTTCAATGCCAGACTTATGTGTGATATGCCTTGAGCACGAATATAATGCCGTTTTTGTACCATGTGGGCATATGTGCTGCTGTACCACTTGCTGTTCACACTTAACCAATTGTCCTCTTTGCCGGCGACGGATCGAACAAGTAGTGAAGACTTTTCGTCATTGA 978 0.4448 MYYVNDNSCIMDAVLLKSVTRVNQLKELAQLLDAEILPLVVSISGRVSSETPIHCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGSDRVHVVGARGATGFVLPVASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDIGTIRVQRPHKGPFYVSPKTLDQLIANLGKWARWYKYASMGFTLFGAYLIAKHAIRFILERRRRCELQKRVLAAAAKRQGQDNEGEKADTLPDGTKRDRSMPDLCVICLEHEYNAVFVPCGHMCCCTTCCSHLTNCPLCRRRIEQVVKTFRH 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181977g00002 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 324 IPR013083 -
Stsc181977g00002 325 ProSiteProfiles Zinc finger RING-type profile. 278 313 IPR001841 -
Stsc181977g00002 325 SUPERFAMILY RING/U-box 277 319 - -
Stsc181977g00002 325 PANTHER - 3 292 IPR044231 GO:0004842|GO:0016567
Stsc181977g00002 325 Pfam E3 Ubiquitin ligase 71 219 IPR022170 GO:0004842|GO:0006996|GO:0016567
Stsc181977g00002 325 Pfam Zinc finger, C3HC4 type (RING finger) 276 319 - -
Stsc181977g00002 325 CDD RING-HC_LRSAM1 278 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181977g00002 Stsc-Chr181977 5914 10609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181977g00002 3 258 C3H Transcription Factor Family AT1G63900 74.419 3.44e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181977g00002 K15688 - gmx:100800734 557.755