Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181976g00001 ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTGACGTTTTCAAAGAGGAGAACTGGTCTTCTCAAGAAAGCACACGAAATATCTGTTCTTTGTGATGCTCAGGTTGCATTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCATCTGAATCCAGCATGGAAGACATTCTGGAACGATATGAAAGACAAGCTCATGCTGAATTTTCTAGCATAAACGATGAACCACAGGGAAACTGGTCTTATGAATGCATCAAGCTCACCGCCAAAGTTGAAGTGTTAGAGAAGAACATTAGGAATTTTGTGGGAAATGATCTTGACCCGTTGAGTTTGAGAGATCTTCAGAGTTTGGAACAGCAGCTTGATGCATCTCTAAAGCGTATCCGAATAAGAAAGAACCAAGTCATGAATCAATCCATCTCGGAGCTGAACAAAAGGGCAAGGCAGTTGCAGGAGCAAAACAGTTTGCTTGCAAAGAAGATGAAAGATAAAGAGAAGACAATGGGTGAAGGTCCACAAGGCTGCCTTGAAACTCTGGGAAAAAGTACACCTAACATCAACTTATCTTCTCCACATAACCTACCACCACAAAGACTAGTTCCTTGTCTAAATCTCAGTGGGAGTATACATGCAGGAGTAGCATCACTGGAAGAAACAGTTGAAGGTCATAACGTTGGTGGTGGCAGCACTGTGATCCCACCTTGGATGCTCCAACATTTGACAACCTAA 756 0.4272 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSESSMEDILERYERQAHAEFSSINDEPQGNWSYECIKLTAKVEVLEKNIRNFVGNDLDPLSLRDLQSLEQQLDASLKRIRIRKNQVMNQSISELNKRARQLQEQNSLLAKKMKDKEKTMGEGPQGCLETLGKSTPNINLSSPHNLPPQRLVPCLNLSGSIHAGVASLEETVEGHNVGGGSTVIPPWMLQHLTT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181976g00001 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc181976g00001 251 Coils Coil 123 176 - -
Stsc181976g00001 251 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Stsc181976g00001 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc181976g00001 251 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181976g00001 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181976g00001 251 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Stsc181976g00001 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181976g00001 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181976g00001 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181976g00001 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Stsc181976g00001 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181976g00001 251 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181976g00001 251 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181976g00001 Stsc-Chr181976 925 11954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181976g00001 1 216 MADS-box Gene Family AT1G26310 52.889 1.78e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181976g00001 K-box 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181976g00001 K09264 - gmx:100788956 308.145