Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181967g00004 GTGGCAGTTAGTTACACAGCAAAGCTAGAAGATGGAACTGTATTTGAGAAAAGAGGAATTGATGAAACTCATCCCTTGGAATTCATTACTGATGAAGAACAAGTTATTGTTGGTCTAGATCGAGCAGTGGTAACTATGAAGAAGGGTGAGAGAGCCATAATTAGCATACATCCTGATTATGCATTTGGAGATGTCGAAGTAAAACAAGATTTTGCCTTTGTGCCACCAAGCTCACGTGTGGTTTATGATGTTGAAATTAGAGATTTCATTAAGAAAGCACCATGGGAATTGAAAAGTAATGAGAAAATTGAGATGGCTAAAAGGAAGAAAGAAGAAGGAAATGTGCTATTTAAAGGTTGCAAGTATGAGAGGGCTGCCAAGAAGTATGATAAGGCTGCTGATTATGTTAGTGAAGATGGATCATTTGGGGATGATGAGGAAAAACAAGCTAAAGCACTAAGAGTTTCATGCTGGTTGAACGGTGCAGCTTGTTGCCTTAAACTTAACAACTTCCCTGAAGCGATCAAGTTATGTTCACAGGTGCTTGATGTTGAGTTTTGCAACGTAAAAGCTTTGTACAGACGAGCGCAAGCATACATAGAGACTGGAGACTTTCTGTTGGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGACCCACAAAATAGGGAGGTAATGGTAATGAAGAAGAAATTAAAGCAACTTCAGGCTGAGAATGATAAGAAAGAGGCTAAGCTCTATGAAAATATGTTTGCGCATAAAGATCACTCATCTGTGCCAACAAAGAGATTGAAGGTTGAGAAAGAAGTGGATGATAGGAGGAAAAATGAAGAGGCTGCGGCGATGGAAAGGGACAAAGTTGCTGATAGTGCTGCTCCTTCTGTCGACGGTTTAATAATGGATTCATAA 909 0.3982 VAVSYTAKLEDGTVFEKRGIDETHPLEFITDEEQVIVGLDRAVVTMKKGERAIISIHPDYAFGDVEVKQDFAFVPPSSRVVYDVEIRDFIKKAPWELKSNEKIEMAKRKKEEGNVLFKGCKYERAAKKYDKAADYVSEDGSFGDDEEKQAKALRVSCWLNGAACCLKLNNFPEAIKLCSQVLDVEFCNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVMVMKKKLKQLQAENDKKEAKLYENMFAHKDHSSVPTKRLKVEKEVDDRRKNEEAAAMERDKVADSAAPSVDGLIMDS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181967g00004 302 Gene3D Tetratricopeptide repeat domain 93 249 IPR011990 GO:0005515
Stsc181967g00004 302 MobiDBLite consensus disorder prediction 267 302 - -
Stsc181967g00004 302 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Stsc181967g00004 302 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1 86 IPR001179 GO:0003755
Stsc181967g00004 302 MobiDBLite consensus disorder prediction 267 285 - -
Stsc181967g00004 302 SUPERFAMILY FKBP-like 1 100 - -
Stsc181967g00004 302 FunFam Peptidylprolyl isomerase 94 249 - -
Stsc181967g00004 302 Gene3D - 1 92 IPR046357 GO:0003755
Stsc181967g00004 302 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 90 IPR001179 GO:0003755
Stsc181967g00004 302 SMART tpr_5 189 222 IPR019734 GO:0005515
Stsc181967g00004 302 SMART tpr_5 106 139 IPR019734 GO:0005515
Stsc181967g00004 302 SMART tpr_5 155 188 IPR019734 GO:0005515
Stsc181967g00004 302 SUPERFAMILY TPR-like 101 254 IPR011990 GO:0005515
Stsc181967g00004 302 Coils Coil 225 245 - -
Stsc181967g00004 302 PANTHER PEPTIDYLPROLYL ISOMERASE 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181967g00004 Stsc-Chr181967 25581 28536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181967g00004 1 86 Calmodulin-binding Proteins AT3G25230 36.047 5.53e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181967g00004 K09571 - gmx:100798382 441.039