Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181958g00001 ATGGCAACCTGTGACATATTTCTTCTATGCTGCCTCATATTCTCCTTCTCCGCCATGGCAATTAGCCTAACAACCATCACTCCCAACACATCAATTCATTACAACGAGACACTGATTTCATCGGGTAGAATCTTCGAAGCTGGATTCCACAGCTTTGGAAATTCACAGAACCTATACTTTTGTATATGGTACATGAACATTTCACCAAGATCAATTGTGTGGGTAGCAAACCGAGACACCCCAGTGACTAACTCTGGAGCAATGTTCAAAGTCAGCGATGGAGGGAATCCAGTTCTAATTCATGGATCAGGGACTCAAATTTGGTCTTCCAATGCAACAGAAACCGTAACAGATCCTGTAATGTTGCTGTTAGACACAGGGAACATGGTTGTGAGGAATGGAAGTAGTAGTAGTGGGAGGATTTTGTGGGAGAGTTTCGATTACCCCGGCGATACTCTGCTTCCAGGGATGGTTCTTCACGTTAATCGAGTCACCGGAGTATACAATTCTTTGAGGTCTTGGAAGGATTCTAGTGATCCGGGAAGTGGTGAATTTTTTTACCATTTAGATGCTCATGGTTTTCCACAACTAGTTATTGGAACTTCATCAAAGTTGTTGTATAGGTTAGGTTCTTGGACAGGGTTCTTCTTCACCGGGGTTCCTTGGGAAACACTCTACCGTTACATCAATTATTCTTTTGTGTTAAGTGATCAAGAAGTTCGGTTCGGGTATGAGCCGAGAAACGGTTCGATTGTTACTAGATACTTGATAACGTCTCTGGGAACCATCCAACGATTTACGTGGTCTTCTGACACCAAAACTTGGCAGCTTTTCCTTGCTGGTCCACAGGATCATTGTGACAATTATGCTTTGTGTGGCGAAAATTCGGAGTGCAATGTTAATAACTCTCCACAATGTGATTGCCTTGAAGGTTTTGTGTTAAAGTCTGCTGGGAATTTGAATGGTGGGTGTGTTACGAAGGTAGAGTTGGATTGTGATGAGAGAGATGGATTTGTGCAGTACACAGGAGTGAAGTTGCCGGATACTTCTTCGTCGTGGTTTGATGAGAGCATGAACTTGAAGGAATGTGCGGAGAAGTGCTTGAAAAACTGCAGCTGCACAGCGTATGCAAGTTTAGATATTAGAAATGGCGGAAGTGGGTGCTTGATTTGGTTTGATGGTCTCATGGACATGAGGTCAGAATCTGAAGGGCAAGATATTTTCATTAGAGTTGCTGCTTCAGAATTAGCTGACAACACAGGGAATAATCAAGAGAATCAAGTTCAGAAATATGAGAAGGAAGACATTGACTTACCCACATTTGATTTTTCAACCATATCTAATGCAACTGATAACTTCTCTCCCAGTAACATATTAGGAGAAGGTGGATATGGACCTGTTTATAAGGGTGCACTAGCAAACGGGCGAGAGATAGCTGTGAAGCGGCTCTCATTGAAATCTAGACAGGGGCCTGAGGAATTCAAAAATGAGGTTATGCTGATTGCCAATCTTCAGCATAGAAATCTTGTGAAACTTCTTGGTTGTTGCATGGATAATGATGAAAGAATTCTAATTTATGAATACATGCCAAACAGAAGTTTGGACAACTTCATTTTCGATCAAACTAGAAGCAAAGCATTGGGTTGGAATAAGCGTTTGAATATTATAAGTGGAATTGCTCGAGGACTTGTTTATCTTCATCAAGATTCTAGACTAAGAATCATCCATAGGGATCTAAAGACCAGTAATATTCTTCTTGACAATAATATGAACCCAAAGATATCAGATTTTGGATTAGCCAGAGTTTTTGGTGGTGATCATGCAGAGGAAAACACAATAAGAGTAGTAGGAACTCATGGTTATATGCCTCCTGAATATGCAGTTTATGGATCTTATTCAGTTAAGTCCGATGTCTTTAGCTTTGGTGTTATTGTACTGGAGATGCTTAGTGGGAGAAAGAATAGAGAATTTTTCGAAGAGCAACATCATCTTAACCTTCTTGGACATGCATGGAGATTGTGGAGTGAGGGTAGGCCATTGGAACTTATGGATAGCTTCATGAGAGATTCAGTTACTATGTCAGAGGCAATAAGATGCATTCACATAGGGCTATTGTGTGTGCAAGAGAGGCCAGATGATAGGCCAGACATGTCTTCTGTTGTTCTAATGTTGAATGGTGAGAGAGCATTGCCTAATCCAAGGCAACCAGGGTTTTATCCACATGAAATAGTTTCTTCAACAAGCAAACATGAACTCTCTTCAACTAATGAAGTTTCCATTTCATTGATAGAGGCAAGATAG 2301 0.4094 MATCDIFLLCCLIFSFSAMAISLTTITPNTSIHYNETLISSGRIFEAGFHSFGNSQNLYFCIWYMNISPRSIVWVANRDTPVTNSGAMFKVSDGGNPVLIHGSGTQIWSSNATETVTDPVMLLLDTGNMVVRNGSSSSGRILWESFDYPGDTLLPGMVLHVNRVTGVYNSLRSWKDSSDPGSGEFFYHLDAHGFPQLVIGTSSKLLYRLGSWTGFFFTGVPWETLYRYINYSFVLSDQEVRFGYEPRNGSIVTRYLITSLGTIQRFTWSSDTKTWQLFLAGPQDHCDNYALCGENSECNVNNSPQCDCLEGFVLKSAGNLNGGCVTKVELDCDERDGFVQYTGVKLPDTSSSWFDESMNLKECAEKCLKNCSCTAYASLDIRNGGSGCLIWFDGLMDMRSESEGQDIFIRVAASELADNTGNNQENQVQKYEKEDIDLPTFDFSTISNATDNFSPSNILGEGGYGPVYKGALANGREIAVKRLSLKSRQGPEEFKNEVMLIANLQHRNLVKLLGCCMDNDERILIYEYMPNRSLDNFIFDQTRSKALGWNKRLNIISGIARGLVYLHQDSRLRIIHRDLKTSNILLDNNMNPKISDFGLARVFGGDHAEENTIRVVGTHGYMPPEYAVYGSYSVKSDVFSFGVIVLEMLSGRKNREFFEEQHHLNLLGHAWRLWSEGRPLELMDSFMRDSVTMSEAIRCIHIGLLCVQERPDDRPDMSSVVLMLNGERALPNPRQPGFYPHEIVSSTSKHELSSTNEVSISLIEAR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181958g00001 766 Gene3D Transferase(Phosphotransferase) domain 1 529 732 - -
Stsc181958g00001 766 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 331 411 - -
Stsc181958g00001 766 Pfam Protein kinase domain 456 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181958g00001 766 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 417 528 - -
Stsc181958g00001 766 Gene3D - 19 146 IPR036426 -
Stsc181958g00001 766 CDD B_lectin 35 149 IPR001480 -
Stsc181958g00001 766 Gene3D Hepatocyte Growth Factor 329 411 - -
Stsc181958g00001 766 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 529 732 - -
Stsc181958g00001 766 SMART serkin_6 453 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181958g00001 766 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 711 - -
Stsc181958g00001 766 SMART blect_4 29 149 IPR001480 -
Stsc181958g00001 766 Gene3D Phosphorylase Kinase; domain 1 412 528 - -
Stsc181958g00001 766 Pfam PAN-like domain 332 398 IPR003609 -
Stsc181958g00001 766 ProSiteProfiles Protein kinase domain profile. 453 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181958g00001 766 PIRSF SRK 1 433 IPR024171 GO:0004674
Stsc181958g00001 766 PIRSF SRK 419 766 IPR024171 GO:0004674
Stsc181958g00001 766 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Stsc181958g00001 766 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Stsc181958g00001 766 Pfam D-mannose binding lectin 72 175 IPR001480 -
Stsc181958g00001 766 SUPERFAMILY Protein kinase-like (PK-like) 436 748 IPR011009 -
Stsc181958g00001 766 CDD PAN_AP_plant 328 412 - -
Stsc181958g00001 766 ProSiteProfiles PAN/Apple domain profile. 332 412 IPR003609 -
Stsc181958g00001 766 SMART ntp_6 333 411 IPR003609 -
Stsc181958g00001 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Stsc181958g00001 766 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 180 IPR036426 -
Stsc181958g00001 766 CDD STKc_IRAK 459 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181958g00001 Stsc-Chr181958 18763 23031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181958g00001 432 739 Receptor kinase-like Gene Family AT4G23150 57.605 6.17e-125 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181958g00001 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181958g00001 - - cit:102616008 820.076