Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181952g00003 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTATCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTCTCCTCGGACCCTGTTGCTATCGATGCTCCGGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCATCGTATATCGAGACACAATTAATTAAGGCTAGGGAGCAACAACAGCAGCAGCAACAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAGCAGCAGCAGCAGCAACAACAACAACACATGCAGATGCAACAGCTCCTGTTGCAGAGGCAGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGCAGCCTCATCCGCAGCCACAGCAACAGCAGCCACAGCCGCAGCAACAACAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTACAAATGGTCTAGTTGGAAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATTGAGGACAGGTTAAAACTGCCCCTTCAAAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTTGGAGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAGGTTCAAGGTCGAAGTCAGCAATTACCAGGGTCTAATCCGGACATCAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCGAACCAAGGTAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACTGGGTTGGAGCAATTACGGTCTGGTCTACTTCAGCAACAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTGATGAATAATAGGAACATGGGGCTAAGTAAGGATGGTCTTTCAAATTCGGTTGGGGATGTACCAAATGTGGGATCACCACTTCCAGGTGGCGGTCCCCCTTTTCCTCGCGGAGATACAGATATGTTAATGAAGTTGAGACTGGCTCAGTTACATCAGCAGCATCAGAATGCTAATCCACAGCAGCAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATAGCATGCATCAACAAGACAGAGTAGCGGGAGCTGGCAGTGTCCCTGCGGATGGAAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGGAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGTTCAGGAACAGCAAATACGGCGGGCCCATCTCCAAGTTCAGCGCCCTCAACTCCCTCCACTCATACACCTGGTGATGTGATGTCAATGCCTGCGTTGCCTCATAGTAGCAGTTCAACAAAGCCTCTAATGATGTTTGGTACTGATGGCACTGGAACTCTTACATCACCCTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACGTGGATCGCTTTGTAGAGGATGGATCTCTTGATGACAATGTTGAATCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAACTCCGTACGTGCAAGCACAAGCAAAGTCGTCTGTTGTCATTTCTCATCCGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAACTACTCTTGAAGAGCATTCGTCTTTAATCACTGATGTCCGTTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCGTTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACTTTTACCGGACATTCAACATCAGTTATGTCCCTAGATTTTCACCCGAATAAAGATGACCTTATCTGCTCTTGTGATGGTGACGGCGAGATACGGTATTGGAGCATCAATAATGGCAGTTGCGCTAGAGTCGCAAAGGGTGGCACTGTGCAAATGAGATTTCAACCTCGATTGGGGAGGTACNNNNNNNNNNTGAGAATGTTGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCATTAA 2361 0.4676 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQQHMQMQQLLLQRQAQQQQQQQQQQQQQQQPHPQPQQQQPQPQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSNPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRMLMNNRNMGLSKDGLSNSVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQQLQQHALSNQQSQSSNHSMHQQDRVAGAGSVPADGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYXXXXRMLYLYLMWRHKHAHIH 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181952g00003 786 Gene3D - 565 765 IPR015943 GO:0005515
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 227 306 - -
Stsc181952g00003 786 Coils Coil 120 140 - -
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 377 561 - -
Stsc181952g00003 786 ProSitePatterns Trp-Asp (WD) repeats signature. 682 696 IPR019775 -
Stsc181952g00003 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 706 748 IPR001680 GO:0005515
Stsc181952g00003 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 706 744 - -
Stsc181952g00003 786 SUPERFAMILY WD40 repeat-like 615 752 IPR036322 GO:0005515
Stsc181952g00003 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 662 IPR001680 GO:0005515
Stsc181952g00003 786 SMART WD40_4 656 695 IPR001680 GO:0005515
Stsc181952g00003 786 SMART WD40_4 699 739 IPR001680 GO:0005515
Stsc181952g00003 786 SMART WD40_4 614 653 IPR001680 GO:0005515
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 420 458 - -
Stsc181952g00003 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 698 IPR001680 GO:0005515
Stsc181952g00003 786 SMART Lish 8 40 IPR006594 GO:0005515
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 136 193 - -
Stsc181952g00003 786 Pfam LisH 10 36 IPR006594 GO:0005515
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 136 173 - -
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 468 527 - -
Stsc181952g00003 786 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 768 - -
Stsc181952g00003 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Stsc181952g00003 786 Pfam WD domain, G-beta repeat 702 739 IPR001680 GO:0005515
Stsc181952g00003 786 Pfam WD domain, G-beta repeat 621 652 IPR001680 GO:0005515
Stsc181952g00003 786 Pfam WD domain, G-beta repeat 660 695 IPR001680 GO:0005515
Stsc181952g00003 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 698 - -
Stsc181952g00003 786 FunFam Transcriptional corepressor LEUNIG 600 754 - -
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 534 561 - -
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 378 392 - -
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 87 115 - -
Stsc181952g00003 786 MobiDBLite consensus disorder prediction 255 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181952g00003 Stsc-Chr181952 14232 24349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181952g00003 638 765 Miscellaneous Gene Families AT5G08390 31.298 4.52e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Stsc181952g00003 WD40 3.3e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181952g00003 - - aip:107605121 1085.48