Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181946g00007 ATGGTGGCGGCGGCTTGGACCAGCGTGCAGAACTCGAACCTGGACCCCGATAAGGCTTCGAGAAGATACTCTGATAGCAGCGGTGCTCATTGGCTTTGTGTGAGTAAGACTGTGTTGCCACAAAATATTGCTACTCATCAACAATATTTTAATTATCTTAGGAGCTTTCCTAATGGAACAAGAAACTGTTACAGAATAAATAATGTAACCATCAATACTGCATATTTAATCAGAGCTAGTTTCTTGTATGGAAACTATGATGGTCTAAATAAGCTTCCACAATTTGAAGTTCATCTTGGAACTAATTTGTGGGACACCTTGAAATTCTCGGATGCATCAGTGAGCATATACAAAGAGCTGTTTTACCCTCTAACAAGAGATTATATAGAAATATGTCTGGTTAACATAGGAACTGGGACACCATTCATTTCGGCTATAGAAATGAGGATTTATCAGAAGAATAATCCTAGCAACGCCGGAAGTTACTCAGCTGCACGATTCAAAGGACTAGACATGGGCAGCATGAACAATTCAACATGCAGGTACAGAGATGACATATATGACTGCTTATGGGAGCCTTATTCTGTTAATGGGTGGAGACAATTAATCAGAACACATGGTGAACCTAATCCAACTCAGAAAAAGGCATATCTTGATGGATATTATGTTCCACCAGCAAGTGTGATGAGAACAGCAGCTACACCAAGAAATGCTACAGATTCTTTGGATTTCTACTTTTACTTGGATAATAGCGTTGCACAAATATATGCTTTCAAATTCTGTTTTGCTGAGGTCAGAAAGCTTGCAGAAAAAGAAAGAAGATCATTCAACATTAGTGTGAATGGCAATTATTGGGAAGGACCTATTCTACCCTCATACAATCAAACAGCTTCCTACAGTTTTTTTACTTCAGATTTGCAGCCAAGAATCAGTGATTACCGATTTTCAATTTATCCCACAGAATTCTCTACCCTTCCACCTATCATCAACTCTCTTGAGATTTTTCTTGTTAAGGATTTCTCACAGCCACAAACTGAAAACAATCAAGCTGATGCTATGAGAAATATCAAGAGAGCTTATAAGGTGTCCAAAAATTGGCAAGGAGATCCATGTGCCCCCATAGCATACACGTGGGATGGTCTAAATTGTACTTCCATTGGTACTCTTAAAATCACATCCTTGAATTTATCTTCTAGTGGACTAACAGGACAAATTGTATCTTACATCTCCATGCTTACTGACTTAGAATCCTTGGATTTATCAAATAATAGCTTAAGTGGGGAGATACCTGATTTTCTTGCAGGCTTGTCATCACTTAAAGTCCTGAACTTGCAGAATAACAACCTCACAGGTCAAGTTCCAAATGCACTTCTCCAAAGATCAAGTGAAGATTATTTCAAAGTTCAAAAGCAATCTGGTGATCAAACTGATTCACAGTTGGAATCTAAGAGAAGACGGTATTCATTCAATGAAGTATCTAACATGACCAATAATTTCGAAAGAATCCTCGGTAGAGGTGGATTTGGAACAGTTTACTATGGCATTATTGATGACATTCAAGTAGCTGTCAAGATGCTTTCGCAATCATCAGTACAAGGATATCAGCAATTTCTAGCAGAGGTTAATATTCTGATGAGGGTTCATCATAGGAATCTAACTTGTCTCATTGGATATTGCAATGAAGAAACAAACATAGCACTCATCTATGAATATATGGAAAATGGCAACTTAGAGGAACATCTTTTGGAGAAAAATAGTAGGGCAAAGTTGTTCAATTGGGAAGAAAGGCTCAATATAGCTATGGATGCAGCCCAAGGACTTGAATATCTACATAACGGTTGTAAGCCACCTATAATCCACAGAGATGTGAAATGTTCAAACATTTTACTAAATGAAAATTTCCAAGCGAAAATGGCTGACTTAGGCTTGTCTAGAACCTTTCCGGTAGACGGTGGCACACATGTAACAACTGTCATTGCCGGAACTCCTGGTTACTTGGATCCAGAGTACCGAGTATCAAATAGGCTAACAGAGAAAAGCGACGTTTATAGTTTTGGAGTAGTTTTATTGGAGATAATCACAGGCAAACCAGCAATAATTAAAGCAGTTGTAGATAAAATTCACATAAGTGAATGGGTTGAATCCATGCTGACAAAAGGTGATTTAAAGTGTATTGTTGACACAAGATTACAAGGAGATTTTGAGACTAGTTCTGTTTGGAGGGCTGTTGAAATAACAATGGCTTCTGTGTCCAATAAATCCTCCAAAAGACCACACATGTCTGATATTGTGACTGAGCTAAAGGAATGTTTGGCTATGGAGTTAGCACGAAAACATAACAGTTGTAGAACCATTACCACAAATTTGGCTCCAGAGAGTAGCCCCCTGGCTTGA 2394 0.3839 MVAAAWTSVQNSNLDPDKASRRYSDSSGAHWLCVSKTVLPQNIATHQQYFNYLRSFPNGTRNCYRINNVTINTAYLIRASFLYGNYDGLNKLPQFEVHLGTNLWDTLKFSDASVSIYKELFYPLTRDYIEICLVNIGTGTPFISAIEMRIYQKNNPSNAGSYSAARFKGLDMGSMNNSTCRYRDDIYDCLWEPYSVNGWRQLIRTHGEPNPTQKKAYLDGYYVPPASVMRTAATPRNATDSLDFYFYLDNSVAQIYAFKFCFAEVRKLAEKERRSFNISVNGNYWEGPILPSYNQTASYSFFTSDLQPRISDYRFSIYPTEFSTLPPIINSLEIFLVKDFSQPQTENNQADAMRNIKRAYKVSKNWQGDPCAPIAYTWDGLNCTSIGTLKITSLNLSSSGLTGQIVSYISMLTDLESLDLSNNSLSGEIPDFLAGLSSLKVLNLQNNNLTGQVPNALLQRSSEDYFKVQKQSGDQTDSQLESKRRRYSFNEVSNMTNNFERILGRGGFGTVYYGIIDDIQVAVKMLSQSSVQGYQQFLAEVNILMRVHHRNLTCLIGYCNEETNIALIYEYMENGNLEEHLLEKNSRAKLFNWEERLNIAMDAAQGLEYLHNGCKPPIIHRDVKCSNILLNENFQAKMADLGLSRTFPVDGGTHVTTVIAGTPGYLDPEYRVSNRLTEKSDVYSFGVVLLEIITGKPAIIKAVVDKIHISEWVESMLTKGDLKCIVDTRLQGDFETSSVWRAVEITMASVSNKSSKRPHMSDIVTELKECLAMELARKHNSCRTITTNLAPESSPLA 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181946g00007 797 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 572 780 - -
Stsc181946g00007 797 Pfam Protein tyrosine and serine/threonine kinase 499 767 IPR001245 GO:0004672|GO:0006468
Stsc181946g00007 797 PANTHER OS07G0107800 PROTEIN-RELATED 31 771 - -
Stsc181946g00007 797 ProSiteProfiles Leucine-rich repeat profile. 414 437 IPR001611 GO:0005515
Stsc181946g00007 797 SUPERFAMILY L domain-like 376 458 - -
Stsc181946g00007 797 Gene3D Transferase(Phosphotransferase) domain 1 572 789 - -
Stsc181946g00007 797 FunFam Leucine-rich repeat receptor-like kinase 348 475 - -
Stsc181946g00007 797 Gene3D Ribonuclease Inhibitor 350 468 IPR032675 -
Stsc181946g00007 797 SMART serkin_6 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181946g00007 797 CDD STKc_IRAK 503 769 - -
Stsc181946g00007 797 FunFam Leucine-rich repeat receptor-like protein kinase 475 571 - -
Stsc181946g00007 797 PRINTS Leucine-rich repeat signature 436 449 - -
Stsc181946g00007 797 PRINTS Leucine-rich repeat signature 415 428 - -
Stsc181946g00007 797 ProSiteProfiles Protein kinase domain profile. 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181946g00007 797 Pfam Leucine rich repeat 391 449 IPR001611 GO:0005515
Stsc181946g00007 797 Gene3D Phosphorylase Kinase; domain 1 484 571 - -
Stsc181946g00007 797 ProSitePatterns Protein kinases ATP-binding region signature. 503 524 IPR017441 GO:0005524
Stsc181946g00007 797 SUPERFAMILY Protein kinase-like (PK-like) 476 767 IPR011009 -
Stsc181946g00007 797 Pfam Malectin-like domain 42 336 IPR024788 -
Stsc181946g00007 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181946g00007 Stsc-Chr181946 23239 28630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181946g00007 44 779 Receptor kinase-like Gene Family AT1G51880 43.970 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc181946g00007 Malectin_like 4.5e-68 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181946g00007 - - ahf:112712814 1226.85