Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181946g00006 ATGCTGACGTGGCCATTTAAGGTCACTGCTGGCATTGATGATAAACCAATGATTGTTGTTACATACAAGAATCAAGAGAAGCAATTTTCTGCGGAAGAAATCTCATCTATGGTTCTCACTAAGATGCGCCAGATTGCAGAGGCACACTTAGAGGCACCAGTCTGTAATGCTGTTATTACTGTACCTGCTTATTTCAATGGCTCTCAGCGTAAGGCTACCAGAGATGCTGGCATCATTGCAGGTCTCAATGTGATGCGAATAATTAGTGAGCCAACCGCTGCGGCCATTGCATACGGCCTTGACAAAAGATTTGATTGCGACAAAGAACGTAATGTGTTCATCTTTGATCTTGGTGGCGGTACTTTCGATGTTTCTCTCCTTACTATTAAGGGCAAGCTCTTCAAAGTTAAGGCTACTTCCGGAAACACTCACCTCGGTGGAGAGGATTTCGATAGCAGACTAGTGAGTCACTTTGTTAAGGAATTCAATAGAAAGAATAAGGTTGACATTAGTGGCAATGCTAGAGCCTTAAGGAGATTGAGAACTGCTTGTGAGAAGGCCAAGAGGACCTTATCTTGCACAGTAACAGCCTCCATTGAATTAGATTCTTTCCATAACGGAATTGACTTCTTTTCATCAATCACGCGTGCTAGATTTGAAGAACTTAATATGGACCTCTTTAGAGAGTGCGTGGAAACGGTAGATCAGTGCTTGATTGACGCGAAAATGGACAAGGCAAGTGTACATGATGTGGTGATTGTTGGTGGCTCTTCAAGGATTCCCAAAGTGCAGGAGTTATTGCAAGAATATTTCAAGGGAAAGGAGCTTTGTAAGAGCATCAATCCCGACGAAGCTGTTGCTTATGGCGCAGCTGTTAAGGCTGCTTTGTTGAATGGAGGCAGTAAGAGTACTGCCCCAGACTTGGTGCTGCAAGATGTTACTCCTCTGTCTCTTGGTATAGAGACAAAAGAAGATGTCATGACTGTTATGATTCCAAGGAATACTACCATTCCTGTAAAGAAATCAGGAGATTTCGCAACATCTAGAGATGACCAAGTGGCAATAGGGCAAAATATTTATGAAGGTGAGAGGACAAGAGCCAGCGACAACAACTTGCTCGGTCGATATGCATTTTCCGGCATCCCTCCTGCTCCTAAAGACTGTAAGCAAATATCAATGTGCTTCGATTTAGATGCTGATGGCATCCTACATATAACTTCCAAGGAAAAGACCACTGGCCTTAAAACCAAGATTACCATAACAAATGATATAGGAAGACCGTCGGGGGAAGAAGTCGAAAGGCTTATTCAGGAAGCTGAGAGATACAAGGATGAAGATGAGAAGTTTCTAAAGAAAGCTAAAGCAATCAATGCTTTGGATGATTATGTTTATGACATGGAGAAAACCTTGAACGGTTCTGATCTTTGTCCTGAGGATAAGAAGAAGCTAAATTCTGCAATTGATAAGGCTAGAGCTGTGCTTGATGATGATAATAAGGAGAAGAAAGAAATTGATGTGTTCGTGGAGCATCTTGAAGAAGCTAAGCTCATTTTTGAGCCCATTATAGCTAAGATTGATTAG 1581 0.4206 MLTWPFKVTAGIDDKPMIVVTYKNQEKQFSAEEISSMVLTKMRQIAEAHLEAPVCNAVITVPAYFNGSQRKATRDAGIIAGLNVMRIISEPTAAAIAYGLDKRFDCDKERNVFIFDLGGGTFDVSLLTIKGKLFKVKATSGNTHLGGEDFDSRLVSHFVKEFNRKNKVDISGNARALRRLRTACEKAKRTLSCTVTASIELDSFHNGIDFFSSITRARFEELNMDLFRECVETVDQCLIDAKMDKASVHDVVIVGGSSRIPKVQELLQEYFKGKELCKSINPDEAVAYGAAVKAALLNGGSKSTAPDLVLQDVTPLSLGIETKEDVMTVMIPRNTTIPVKKSGDFATSRDDQVAIGQNIYEGERTRASDNNLLGRYAFSGIPPAPKDCKQISMCFDLDADGILHITSKEKTTGLKTKITITNDIGRPSGEEVERLIQEAERYKDEDEKFLKKAKAINALDDYVYDMEKTLNGSDLCPEDKKKLNSAIDKARAVLDDDNKEKKEIDVFVEHLEEAKLIFEPIIAKID 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181946g00006 526 Gene3D - 3 37 - -
Stsc181946g00006 526 Gene3D - 103 277 - -
Stsc181946g00006 526 ProSitePatterns Heat shock hsp70 proteins family signature 3. 251 265 IPR018181 -
Stsc181946g00006 526 Gene3D - 38 295 - -
Stsc181946g00006 526 Pfam Hsp70 protein 3 514 IPR013126 GO:0005524|GO:0140662
Stsc181946g00006 526 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 455 525 IPR029048 -
Stsc181946g00006 526 SUPERFAMILY Actin-like ATPase domain 3 102 IPR043129 -
Stsc181946g00006 526 FunFam Endoplasmic reticulum chaperone BiP 6 113 - -
Stsc181946g00006 526 PANTHER HEAT SHOCK PROTEIN 70KDA 3 489 IPR013126 GO:0005524|GO:0140662
Stsc181946g00006 526 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 303 455 IPR029047 -
Stsc181946g00006 526 FunFam Heat shock protein ssb1 1 37 - -
Stsc181946g00006 526 ProSitePatterns Heat shock hsp70 proteins family signature 2. 114 127 IPR018181 -
Stsc181946g00006 526 Coils Coil 432 452 - -
Stsc181946g00006 526 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 306 460 IPR029047 -
Stsc181946g00006 526 Coils Coil 480 500 - -
Stsc181946g00006 526 PRINTS 70kDa heat shock protein signature 57 77 - -
Stsc181946g00006 526 PRINTS 70kDa heat shock protein signature 120 130 - -
Stsc181946g00006 526 PRINTS 70kDa heat shock protein signature 307 326 - -
Stsc181946g00006 526 PRINTS 70kDa heat shock protein signature 280 300 - -
Stsc181946g00006 526 PRINTS 70kDa heat shock protein signature 248 264 - -
Stsc181946g00006 526 PRINTS 70kDa heat shock protein signature 388 404 - -
Stsc181946g00006 526 Gene3D Actin; Chain A, domain 4 146 229 - -
Stsc181946g00006 526 FunFam Heat shock 70 kDa 146 229 - -
Stsc181946g00006 526 SUPERFAMILY Actin-like ATPase domain 107 297 IPR043129 -
Stsc181946g00006 526 Gene3D - 456 526 IPR029048 -
Stsc181946g00006 526 FunFam Heat shock 70 kDa protein 301 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181946g00006 Stsc-Chr181946 20856 22436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181946g00006 4 525 Calmodulin-binding Proteins AT3G12580 64.449 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181946g00006 K03283 - zju:107431116 676.396