Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181944g00001 ATGGAGGTTTCAGATTTTCTCAATAGTATCTCAGCTTCAATATTAAGAAAACCTTTCTCGGACTCTAAGATTCTATCTCTATCCAACACGATCCTAGGATTGCCATTTTTGGAACTTGCTGCAATCTGCGTGAACCTTACCCTTGTTGTCTTGTTCCTCTTTGTTGTATCCGTTAGGAAGATTTGTGTGTGCGAAGGTAGGATTCGAATTAATAAGGAAAATGGTACCTCTACCACCTCCATCAATGGCAACAATGCCATTGATGGTGAAGTTGTAATAGGTTCAATGTTCAAGTTCTCAGTGTTCTCTTGTTTCTATGTCCTTTTTGTGCAAGTTGTGGTGCTTGGTTTTGATGGGGTTTCTTTGATTTCAAATGGGGCTGATGGAGAGCATGTGAACTGGTTCCTTCTATGTGTGCCAGCTGCACAGGGTTTGGCTTGGTTTGTGTTGAGCTTCTCTGCATTGCAATGCAAGCTCAAGGTTTCTCACAAGTTCCCTTTTATCTTGAGGGTTTGGTGGTTATTGTCTTTTGTTATCTGTTTGTGCAATTTGTATGTTGATGTGAGAGGTCTTTATGGGGAAGGTTATGAATACCTTTCCACTCGAGTAGTGGCGAATTTTGCCGTCACCCCGGCACTTGCATTCTTGTCTGTGGCTGCAATTAGGGGTGTTACTGGTATAGAAGTTTGTGTGGACCTTGATGCTCAGGAGCCGCTGCTTGTTGAAGAGGAGACAGCGTGTCTCAAGGTTACACCTTATAAAGATGCCGGAATTTTCAGCTTGGCCACGATTTCGTGGCTGAATCCGCTTCTTTCCATGGGTGCAAAGAGACCCCTTGAGCTTAAAGACATTCCCCTTGTAGCGCCAAAAGATAGATCCAAGACTAGTTATAAGATTTTGAACACTAATTGGGAGAGATTGAAGGCTGAAAACCCCTCTAAGCAGCCCTCGTTAGCTTGGGCGATTCTAAAGTCGTTTTGGAAGGAAGCAGCAGTGAATGCCATCTTTGCTGGCCTGAATACTCTGGTAGCTTATGTTGGTCCGTATATGATAAGTTACTTTGTTGATTACTTGGGTGGAATAGAGACTTTTCCTCATGAAGGCTATGTCCTCGCCGGAATATTCTTTGCTGCGAAGCTTGTGGAGACGCTGACTACTCGGCAGTGGTATCTAGGAGTGGACATCTTGGGTATGCACGTCAGGTCAGCTCTAACGGCAATGGTGTACCGAAAGGGGCTAAGGCTCTCAAGCTCGGCCAAGCAAAGTCACACAAGTGGGGAGATTGTCAATTACATGGCTGTTGATGTTCAGAGGGTAGGGGATTACTCGTGGTATCTTCATGACATGTGGATGCTTCCGATGCAGATTATTCTTGCCCTTCTAATTTTGTACAAGAGTGTTGGAATAGCTGCCATTGCAACATTGATTGCGACAGTAATTTCCATTGTTGTAACTGTTCCTGTGGCTAGAATACAAGAAAATTATCAAGATAAGTTGATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCAGAGAGCTTAAGGAATATGAGGATTCTCAAGCTTCAAGCTTGGGAAGACAGATACCGGTTAAAATTGGAGGAAATGCGTGGAACGGAATACAAGTGGCTGAGGAAAGCACTCTATTCTCAGGCTTTCATAACCTTCATATTCTGGAGCTCACCGATTTTTGTTTCGGCAGTCACTTTCGCTACTTGCATATTGTTGGGTGGTCAGCTGACAGCAGGTGGTGTCCTTTCTGCCTTGGCTACATTTCGGATCCTCCAAGAACCTCTGAGAAACTTTCCAGACCTGGTGTCAACGATGGCTCAGACAAAAGTTTCGCTTGATCGGATAACTAAGATTAACGATGGCGTCTTCTGCTGGGACCCTTCTTTGTCTAGGCCTACACTGTCAGGAATACATATGAAGGTCGAAAAGGGGATGCGTGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGCTTCCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCGGGTGAAGTTAAAGTATGTGGCACTGCTGCATACGTATCCCAATCGGCATGGATACAGACAGGAAATATAGAAGAAAATATTCTCTTTGGAAATGCGATGGACAAACCAAGGTACAAGAAGGTTATTCAAGCTTGTTCACTGAAAAAGGACCTAGAGCTTTTCTCACACGGAGACCAAACAATTATCGGTGATAGAGGTATAAACCTCAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCTCGAGCACTTTACCAAGACGCTGATATTTATCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGATTTGTTCAGGGAGTATGTATTGACAGCATTAGCGGAAAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTACTGATCTGATACTGGTTCTTAAAGAAGGACAAATCATACAGGCTGGAAAATATGATGAGCTTCTACAAGCTGGAACAGATTTTAAGACTCTAGTTTCAGCTCATCATGAAGCAATAGAAGCTATCGATATTCCTTCTCACTCAGATGAATCAGATGAAAATGAAAACATGTCTCCGGATAGATCTATTATGACAGAAAAGAGATCCTCTGCTTCACTACTCGACATTGATGGTCTGGCAAAGGAAGTGCAAGAGGGATCGTCTGATCAGAAGGCAATCAAGGAGAAGAAGGCGAAGCGCTCAAGAAAAAAACAGCTTGTTCAAGAAGAGGAGAGGGTTAGAGGTCGAGTGAACATGAAGGTTTACTTGTCATACATGGCTGCAGCATATAAAGGTTCATTGATTCCGCTCATAATTGTGGCACAGTCATTATTTCAGTTCCTTCAGATTGCTAGTAACTGGTGGATGGCTTGGGCAAATCCTCAAACAACTGGTGATGAGCCGAAAGTAACTTCCACTGAACTTCTTCTTGTGTACATGGCCCTTGCTTTCGGCAGCTCATGTTTCATATTTGTAAGGGCCGTTCTGGTAGCTACATTTGGTCTTGCTGCTGCACAAAAGTTATTTTTTAGCATGCTCAGATGTATTTTTCGTGCACCAATGTCTTTCTTTGACTCTACACCATCTGGAAGGGTCCTGAATCGGGTTTCAGTTGATCAAAGTGTTGTGGATCTCGACATTCCTTTTAGACTTGGAGGGTTTGCTTCAACAACAATACAGCTCATAGGAATTGTTGCTGTAATGACAACAGTTACATGGCAAGTTCTGCTCCTTGTTATCCCGATGGCTATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGAATTGTAAGCATCCAGAAATCTCCAATAATACATCTTTTTGGTGAATCAATTGCGGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTTTACCTTTTGGATTGTTTTGCAAGGCCATTTTTTTGCAGTCTTGCGGCTATTGAGTGGCTATGCTTGCGCATGGAATTACTATCCACTTTTGTGTTTGCTTTTTGTATGGTTCTACTTGTGAGTGTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTAGCGGTGACGTATGGCCTGAATTTAAATGGACGTCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATTATATCTATTGAAAGGATTTATCAGTACAGCCAAGTTCCTAGTGAAGCACCTGCAATCATTGATGATTCTCGTCCTCCGTCGTCATGGCCCGAGAATGGAACAATCCAAATAGTTGATTTGAAGATACGTTACAAGGAAAACCTTCCATTGGTGCTTCGTGGAATATCATGTACATTTCCTGGTGGGAAGAAGATTGGAATAGTCGGACGTACAGGCAGTGGAAAATCTACTTTAATTCAGGCATTATTTCGATTGGTTGAACCATCTCAGGGGAGTATCCTTATTGACAACATTGATATTTCGAAAATTGGCCTCCATGATCTTCGAAGCCGTCTAAGTATAATACCTCAAGATCCAACCTTATTTGAAGGCACCATAAGAGGAAATCTTGATCCTCTTGGGGAGCACTCAGATAAAGCAATTTGGGAGGCACTGGATAAGTCTCAGCTTGGAGAGGTTATCCGTTCAAAAGGACAAAAGCTCGATACACCAGTGCTTGAAAATGGTGATAACTGGAGTGTAGGACAACGACAACTTGTAGCTCTAGGCCGTGCCCTACTTAAACAGTCAAAGATACTTGTACTTGACGAAGCAACGGCATCTGTTGATTCTGCAACAGATAATCTCATCCAAAAGATTATTCGAGAAGAGTTCAAAGAGTGCACTGTTTGCACCATTGCACATCGTATTCCTACGGTTATCGACAGTGATCTAGTTTTGGTTCTCAGTGATGGTCGGGTTGCAGAGTTTGACACTCCGTTGCGGCTATTAGAGGATAGGTCATCTATGTTCCTAAAGTTGGTAAGCGAGTATTCATCGCGGTCGAGTGGCATACCGGATTTTTAG 4530 0.4325 MEVSDFLNSISASILRKPFSDSKILSLSNTILGLPFLELAAICVNLTLVVLFLFVVSVRKICVCEGRIRINKENGTSTTSINGNNAIDGEVVIGSMFKFSVFSCFYVLFVQVVVLGFDGVSLISNGADGEHVNWFLLCVPAAQGLAWFVLSFSALQCKLKVSHKFPFILRVWWLLSFVICLCNLYVDVRGLYGEGYEYLSTRVVANFAVTPALAFLSVAAIRGVTGIEVCVDLDAQEPLLVEEETACLKVTPYKDAGIFSLATISWLNPLLSMGAKRPLELKDIPLVAPKDRSKTSYKILNTNWERLKAENPSKQPSLAWAILKSFWKEAAVNAIFAGLNTLVAYVGPYMISYFVDYLGGIETFPHEGYVLAGIFFAAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIILALLILYKSVGIAAIATLIATVISIVVTVPVARIQENYQDKLMAAKDERMRKTSESLRNMRILKLQAWEDRYRLKLEEMRGTEYKWLRKALYSQAFITFIFWSSPIFVSAVTFATCILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRITKINDGVFCWDPSLSRPTLSGIHMKVEKGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGTAAYVSQSAWIQTGNIEENILFGNAMDKPRYKKVIQACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYVLTALAEKTVIFVTHQVEFLPATDLILVLKEGQIIQAGKYDELLQAGTDFKTLVSAHHEAIEAIDIPSHSDESDENENMSPDRSIMTEKRSSASLLDIDGLAKEVQEGSSDQKAIKEKKAKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGSLIPLIIVAQSLFQFLQIASNWWMAWANPQTTGDEPKVTSTELLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFFSMLRCIFRAPMSFFDSTPSGRVLNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTTVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSVPHGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQVPSEAPAIIDDSRPPSSWPENGTIQIVDLKIRYKENLPLVLRGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSQGSILIDNIDISKIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLGEHSDKAIWEALDKSQLGEVIRSKGQKLDTPVLENGDNWSVGQRQLVALGRALLKQSKILVLDEATASVDSATDNLIQKIIREEFKECTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPLRLLEDRSSMFLKLVSEYSSRSSGIPDF 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181944g00001 1509 SUPERFAMILY ABC transporter transmembrane region 319 619 IPR036640 GO:0005524|GO:0016020
Stsc181944g00001 1509 FunFam ABC transporter C family member 10 314 624 - -
Stsc181944g00001 1509 Coils Coil 902 922 - -
Stsc181944g00001 1509 Gene3D - 1246 1498 IPR027417 -
Stsc181944g00001 1509 Pfam ABC transporter 1280 1428 IPR003439 GO:0005524
Stsc181944g00001 1509 FunFam ABC transporter C family member 5 604 852 - -
Stsc181944g00001 1509 Pfam ABC transporter 638 772 IPR003439 GO:0005524
Stsc181944g00001 1509 MobiDBLite consensus disorder prediction 894 916 - -
Stsc181944g00001 1509 CDD ABC_6TM_ABCC_D1 332 619 IPR044746 GO:0140359
Stsc181944g00001 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 334 611 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181944g00001 1509 CDD ABCC_MRP_domain1 621 820 - -
Stsc181944g00001 1509 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 253 1500 - -
Stsc181944g00001 1509 MobiDBLite consensus disorder prediction 852 871 - -
Stsc181944g00001 1509 FunFam ABC transporter C family member 3 1246 1498 - -
Stsc181944g00001 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 842 IPR027417 -
Stsc181944g00001 1509 CDD ABC_6TM_ABCC_D2 944 1238 IPR044726 GO:0140359
Stsc181944g00001 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1254 1494 IPR027417 -
Stsc181944g00001 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 614 843 IPR003439 GO:0005524
Stsc181944g00001 1509 CDD ABCC_MRP_domain2 1261 1481 - -
Stsc181944g00001 1509 SUPERFAMILY ABC transporter transmembrane region 944 1249 IPR036640 GO:0005524|GO:0016020
Stsc181944g00001 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1263 1497 IPR003439 GO:0005524
Stsc181944g00001 1509 SMART AAA_5 1289 1474 IPR003593 GO:0016887
Stsc181944g00001 1509 SMART AAA_5 647 828 IPR003593 GO:0016887
Stsc181944g00001 1509 MobiDBLite consensus disorder prediction 852 873 - -
Stsc181944g00001 1509 Gene3D - 623 850 IPR027417 -
Stsc181944g00001 1509 ProSitePatterns ABC transporters family signature. 745 759 IPR017871 GO:0005524|GO:0016887
Stsc181944g00001 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 946 1216 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181944g00001 1509 Coils Coil 492 512 - -
Stsc181944g00001 1509 Gene3D ABC transporter type 1, transmembrane domain 301 622 IPR036640 GO:0005524|GO:0016020
Stsc181944g00001 1509 Gene3D ABC transporter type 1, transmembrane domain 905 1244 IPR036640 GO:0005524|GO:0016020
Stsc181944g00001 1509 FunFam ABC transporter C family member 5 907 1244 - -
Stsc181944g00001 1509 Pfam ABC transporter transmembrane region 946 1186 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181944g00001 1509 Pfam ABC transporter transmembrane region 335 599 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181944g00001 Stsc-Chr181944 6685 15447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181944g00001 634 836 Calmodulin-binding Proteins AT2G36910 31.081 2.68e-19 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181944g00001 - - gmx:100781010 2441