Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181939g00001 ATGGATTCACAACAGCTATATAGTTTTGGTGTGACAAGTGCAGGGCTACCTTATATTCCTTCTTTCCCAAGCATCCCGTCGTCGCTACCCAACAGGCTTCTTGGATCCTTGAAATTTGACACTGGCAACTCGCCCAATTCGCCCTTTTCCACTCATTTTGATTCTGATACTCTTTCAGCCTTGAGTGATAGCCAGGACCAGCAGCACAGCCCCGGAGAAATTCTATCCGGTGTCAGCCCCTCGTGCAACTCTCCCTTTGAAACCAAACATTACTTGCATAGATCAGTCTCGTCCGCCGGCGGTATCAGGGACAGTTTGCAACTCTATTCTGCCAGGAGCTCTCTTCTGCAGAATGCTAATTGTAACCAGAAAATTCGAAACGTGTTGCTGGAATTAGAATCTGCACTGATGGCCCCTGATGATGAAGAAGTCACTACATCCAATGCTTCAATGGTTGAGAGCAGCGGACCCACGACATCCGAGCAAAGGAATAGGTCATGGAGCCATGATCACTATGGGTCGCAGTTTGTTCAGAGCCAGGCATCATATGTAACTGGAAGCAGCCAAACAAGTGAGTTTGAACATGCTGTAAAACGTCAGAAATCGATGGTGGAAGCATCGTCACCGCCGGGTTTCCCCGGAAATTTGAAACAATTGCTGATTGCTTGTGCTGAGGCCATGTCTGATGGCAACATGAATGATTTTGACCAATTGATATCAAAGGCTAAAGCTGCTGTATCTATCACTGGGGAGCCGATGCAACGGCTTGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGAAGGAAGCATCGGGGACTGGCATCTATCGCGCCCTTAAGTGCAGAGAGCCGGAAGGCAAAGACTTACTTTCATACATGCAAATGCTGTTTGAAATCTGTCCCTATCTAAAATTTGGTTACATGGCAGCCAACGGAGCCATAGCCGAAGCTTGCCGAAATGAGGATCACATACACATAATAGACTTCCAGATTGCTCAAGGAACTCAATGGATGACTCTCCTCCAAGCTCTTGCTGCAAGACCTTGTGGACCTCCCCATGTGAGGATTACAGGGNNNNNNNNNNCGGCGAAGGACTAG 1098 0.4754 MDSQQLYSFGVTSAGLPYIPSFPSIPSSLPNRLLGSLKFDTGNSPNSPFSTHFDSDTLSALSDSQDQQHSPGEILSGVSPSCNSPFETKHYLHRSVSSAGGIRDSLQLYSARSSLLQNANCNQKIRNVLLELESALMAPDDEEVTTSNASMVESSGPTTSEQRNRSWSHDHYGSQFVQSQASYVTGSSQTSEFEHAVKRQKSMVEASSPPGFPGNLKQLLIACAEAMSDGNMNDFDQLISKAKAAVSITGEPMQRLGAYMVEGLVARKEASGTGIYRALKCREPEGKDLLSYMQMLFEICPYLKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPCGPPHVRITGXXXXAKD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181939g00001 365 MobiDBLite consensus disorder prediction 141 171 - -
Stsc181939g00001 365 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 189 359 IPR005202 -
Stsc181939g00001 365 Pfam GRAS domain family 216 361 IPR005202 -
Stsc181939g00001 365 MobiDBLite consensus disorder prediction 140 171 - -
Stsc181939g00001 365 ProSiteProfiles GRAS family profile. 207 365 IPR005202 -
Stsc181939g00001 365 MobiDBLite consensus disorder prediction 45 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181939g00001 Stsc-Chr181939 15489 18486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181939g00001 214 358 GRAS Transcription Factor Family AT1G50600 59.310 3.49e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc181939g00001 GRAS 2e-47 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181939g00001 - - adu:107462432 654.44