Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181936g00004 ATGAGTTCTGATAAACCAGTTTTCTCTGATTCAGATCTTCCTCCACTGATCCAACATCTTCCGAAGAAATCAGGATCCATAGCTTCTTCTGAGATTGAGGATGCTTCTGAATCTCATCATAAAACAGGTTTTGATCTAAGGGAAGACAGAGACGTTGATTTAGCTAGTGAAGCTAGCTTCCATTCAGCAGTTGAGACCTATTCCTCTTTTGGGGCAGATAAAGATTTCAATTCTGGTGAGTCCCATTTGCCCCACAAACACCACAAGCACCCTTTGGAATGCTCCACGAAGGAGAGGGTGCGAGGGGTATCGTGGGGTGCAATGGAACTGCATGATGCCACCACCAATAGTAGTAGCATTAGTGTGCCATTTGAAATCTCAGGTGCTTCTTCACAACAGCATGTAGTTCATCATGAGAATAGGCTGAGTAGTAATCACAATAACTATAATAAGTCTCAGAGGGTTAGGCACAAGAGCAACGTGCAGTTCGATGATGTTTTGTTGCAGGATGATAGTGCTAGGTTGATATATATTAATGATCCTAAGAGGACTGATGATAAGTGTGAGTTGCCGGGGAATGAGATCAGGACTAGTAAATACACAATTGTTACCTTCTTGCCTAAGAATCTTTTTATTCAGTTTCATAGGGTTGCTTATTTGTATTTCCTTGCGATTGCGGCTCTCAATCAGCTTCCTCCCTTGGCCGTATTTGGGAGGACTGTGTCACTCTTCCCTCTGTTGTTTGTGCTCTGTGTCACGGCTATTAAGGATGGATATGAAGACTGGCGGCGGCACCGGTCTGATCGCAATGAGAACAACAGGGAATCACTGGTCCTTCAGCATGACGATTTCCGGCCAAAGAAGTGGAAAAATATACAAGCTGGCGAGGTTGTTAAGATCTTTGCTGATGAGACTATTCCGGCTGACATGGTCTTGCTGGGGACAAGTGATCAAAGTGGGCTTGCCTATATTCAGACAATGAATTTGGATGGAGAGTCAAATTTGAAGACTAGGTATGCTAAGCAGGAAACAACTAATGCAGTTTCTTCGGAAGGTTGTCATGTTTCTGGGGTTATCAGATGCGAGCAGCCTAACCGGAATATTTATGAGTTCACGGCAAACATGGAATTCAATGGGCTTAAGTTTTCGCTTAGCCAGTCTAACATTGTTCTGCGTGGTTGCCAACTGAAGAACACGGATTGGATCATTGGTGTTGTGGTTTATGCTGGACAAGACACAAAAGCAATGATGAACAGCACACCTTCTCCTTCTAAGAGAAGCAAACTGGAAAACAAGACAGGAACACTAACTGAAAACAAAATGGAATTCCGGAGGGCTAGTGTAAATGGGAAGAATTATGGGAACTCTTTGGTCATGGCTGATGATACAGCAGCTGCAGCTGTTATTCCTAGACGTAGATGGAAGCTCCAATCTGAAATCCCCGTTGATCCTGAACTGCTGACTGTATTGCAGAGGGAATCACATGGAGATGACCGAATAGCTGCTCATGAGTTTTTTCTTACATTGGCAGCTTGCAATACTGTGATCCCTATTCCTACTGGTGATACATTTTCCAGAACAAGTGATACAAATGAAGATATGGAAGGTATTGAGTACCAGGGGGAATCTCCTGATGAACAAGCTCTAGTTTCTGCTGCTTCTGCATATGGATATACTCTTTTTGAGCGAACATCTGGACACATCGTTATTGACGTCAATGGTGAGAAGCTCAGATTGGATGTATTGGGCCTACACGAGTTTGATAGTGTGCGCAAGAGGATGTCTGTTGTTATTCGTTTTCCCAACAACATTGTAAAGGTGTTAGTCAAAGGTGCTGATACTACAATGTTTAGCATTTTAGCGAATGACAGTGAGAGCCACAATACCATACGAGATGTAACTCAGAGTCATCTGAACGAATATTCTTCAATAGGTCTCCGCACTCTTGTAGTTGCATCTCGAGATCTTTCAAATGCTGAACTTGAAGAGTGGCAAAGCATGTATGAAGAGGCCAGCACTTCTTTGCATGAAAGAGCTGCTAAACTACGTCAGACAGCAGCGTTTATAGAATGCAACTTAAAGCTACTTGGAGCAACTGGAATTGAGGACAAGCTGCAAGAGGGTGTACCTGAAGCGATTGAGTCCCTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACAGGTGATAAGCAAGAGACAGCAATTTCAATTGGTCTCTCTTGCAAACTTCTCACTGCAGATATGCAACAGATTATTATAAATGGCACTTCAGAGGTTGATTGTCGTAATCTTTTGGGTGATGCTAAAGCTAAATATGGTGTGAAGTCTTCAACTAATCAGAATCGAAAACAAAAATCCAATTCTGGACTTGGTGATCTTGATATTCCCAATGGATCAAAGTCATTGAGTTTGCCTAAGTGGAATCCAGGACAGGAAGAAGGAACTACTGCTCCATTGGCGCTCATAATTGATGGGAACAGTTTGGTTTATATTTTGGAGAAGGAATTAGAATCAGAGCTTTTCGACCTGGCAACTTCCTGGGCCAATGATGTATCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCAATGGGGCAATTTCAGTTCTTGAAAAAATTACTCCTGGTTCATGGGCACTGGAATTATCAGCGTGTGGCTTACTTGATTCTGTACAACTTTTACCGCAATGCTGTCTTTGTGTTGATGTTATTCTGGTATATATTATGCACTGCTTTCTCTACAACGTCTGCGTTGACAGATTGGAGTAGTGTATTCTATTCTGTGATATACACATCTGTACCTACCATCTTTGTTGGTATTCTAGACAAAGACTTGAGCCACAGGACACTGTTGAAGTATCCGAAGCTGTACGCAGCTGGTCACAGGCAAGAGGCATACAATTTGCAATTATTCTGGATTACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTCTACACGCCTTTGTTCACATACAAGGACAGCACAATCGATATATGGAGCATGGGCAGTTTGTGGACAATTGCGGTTGTTATTCTTGTAAATGTTCACCTGGCCATGGACATCAACCGTTGGGTATTAATTACTCATGCTGCTGTATGGGGATCAATAATCATTACATATGGTTGCATGGTAGTCTTGGATTCAATACCCGTCTTTCCCAATTACTGGACTATTTATCATCTGGCTGTGTCCCCTACATATTGGATAACAATTGTACTTATAATTATTGTAGCGCTGCTCCCTCGCTTTACTTGTAAAGTTGTTTGCCAAATATTTTGGCCTTCGGATATCCAGATAGCTAGAGAAGCTGAGCTACTGAGAAAACGACATAATCATCTGCAGTCGAGGCAACAAGTTTCCAGTTAA 3417 0.4261 MSSDKPVFSDSDLPPLIQHLPKKSGSIASSEIEDASESHHKTGFDLREDRDVDLASEASFHSAVETYSSFGADKDFNSGESHLPHKHHKHPLECSTKERVRGVSWGAMELHDATTNSSSISVPFEISGASSQQHVVHHENRLSSNHNNYNKSQRVRHKSNVQFDDVLLQDDSARLIYINDPKRTDDKCELPGNEIRTSKYTIVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQHDDFRPKKWKNIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYAKQETTNAVSSEGCHVSGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQDTKAMMNSTPSPSKRSKLENKTGTLTENKMEFRRASVNGKNYGNSLVMADDTAAAAVIPRRRWKLQSEIPVDPELLTVLQRESHGDDRIAAHEFFLTLAACNTVIPIPTGDTFSRTSDTNEDMEGIEYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPNNIVKVLVKGADTTMFSILANDSESHNTIRDVTQSHLNEYSSIGLRTLVVASRDLSNAELEEWQSMYEEASTSLHERAAKLRQTAAFIECNLKLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTADMQQIIINGTSEVDCRNLLGDAKAKYGVKSSTNQNRKQKSNSGLGDLDIPNGSKSLSLPKWNPGQEEGTTAPLALIIDGNSLVYILEKELESELFDLATSWANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVAYLILYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIFVGILDKDLSHRTLLKYPKLYAAGHRQEAYNLQLFWITMIDTVWQSLVLFYTPLFTYKDSTIDIWSMGSLWTIAVVILVNVHLAMDINRWVLITHAAVWGSIIITYGCMVVLDSIPVFPNYWTIYHLAVSPTYWITIVLIIIVALLPRFTCKVVCQIFWPSDIQIAREAELLRKRHNHLQSRQQVSS 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181936g00004 1138 Pfam Phospholipid-translocating ATPase N-terminal 176 241 IPR032631 -
Stsc181936g00004 1138 SUPERFAMILY HAD-like 685 892 IPR036412 -
Stsc181936g00004 1138 Gene3D - 431 699 IPR023299 GO:0000166
Stsc181936g00004 1138 Pfam Cation transport ATPase (P-type) 531 617 - -
Stsc181936g00004 1138 Gene3D - 249 419 - -
Stsc181936g00004 1138 Pfam Phospholipid-translocating P-type ATPase C-terminal 872 1112 IPR032630 -
Stsc181936g00004 1138 Gene3D - 847 889 IPR023214 -
Stsc181936g00004 1138 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Stsc181936g00004 1138 PRINTS P-type cation-transporting ATPase superfamily signature 719 729 - -
Stsc181936g00004 1138 PRINTS P-type cation-transporting ATPase superfamily signature 844 863 - -
Stsc181936g00004 1138 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 435 709 IPR023299 GO:0000166
Stsc181936g00004 1138 Gene3D - 700 787 IPR023214 -
Stsc181936g00004 1138 SUPERFAMILY Calcium ATPase, transmembrane domain M 192 1111 IPR023298 -
Stsc181936g00004 1138 NCBIfam HAD-IC family P-type ATPase 688 744 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181936g00004 1138 MobiDBLite consensus disorder prediction 775 794 - -
Stsc181936g00004 1138 FunFam Phospholipid-transporting ATPase 539 683 - -
Stsc181936g00004 1138 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 431 845 - -
Stsc181936g00004 1138 MobiDBLite consensus disorder prediction 1 45 - -
Stsc181936g00004 1138 SUPERFAMILY Calcium ATPase, transduction domain A 274 416 IPR008250 -
Stsc181936g00004 1138 MobiDBLite consensus disorder prediction 775 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181936g00004 Stsc-Chr181936 17380 24323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181936g00004 126 432 Primary Pumps ATPases AT5G04930 57.643 6.32e-109 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181936g00004 K14802 - gmx:100812459 1180.62