Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181934g00004 ATGAGGGCTAAGAGAATCGATGTGAGAAGGGTGGAGGGCTCTGAGTGGGAGAAACACGGTAAGGGTTCCGGCTATGCTGGAAGGAGAAACAAGAGGGAGAGTGCGGGGGGGCGTGCATTTGGTGTCTGGAGGGTTAACCGGAACAAGGATGAGAGTGCAAATCCTAATGTACAGGATTGTAACGCAGGGTTCGTTGATAACCTGCCATTGAAGGTGACTAAGAGGGAGATCTACAAAAGATTTAGAAGGAACGGGTACATCACCGATATCTTCATATCAAGAAAATTACGCAAGAATGCAATTGGTCCCTTCGCATTCGTCAGATTCCATTCATATGAAGGGGCAGCAAAAGCAATAACAACGATCAATGGTACAATCTGGGATGATGCTAAGCTGTATGTAACCATGGCCAGAAGCAAAAGGATAGGAAACTCGGAACGAACGCAAGAAAGATATGTGAAGCAGCAAGGAACTAATAGTGGAATTCAGAAGAAGTGGGTGGCTATTGGAGCTAAAACAAAGGATAGACAAACTGAACACTCAGACAGGTGTTGTAACTCCATGAAATGCAGGACGAAAGAAGTGGAAGCGTTATGGTGTGCTGAGCAAAAACAGAGACTACAGAGGAGCTTATTGGGGGTGAGTGTGAAACCGATATACTTTAGAAAGGTCATGTACAAGTTGATGGATGAATGGAAGGGCCCGGGAAAAATCGAATGCAGAGATGTAGGCCCCTTCAGATGCCTGCTCACATTTGATACTACAGAAATTAGAGACGCGGCTTTGGAAGATGAATTGTTATAA 804 0.4502 MRAKRIDVRRVEGSEWEKHGKGSGYAGRRNKRESAGGRAFGVWRVNRNKDESANPNVQDCNAGFVDNLPLKVTKREIYKRFRRNGYITDIFISRKLRKNAIGPFAFVRFHSYEGAAKAITTINGTIWDDAKLYVTMARSKRIGNSERTQERYVKQQGTNSGIQKKWVAIGAKTKDRQTEHSDRCCNSMKCRTKEVEALWCAEQKQRLQRSLLGVSVKPIYFRKVMYKLMDEWKGPGKIECRDVGPFRCLLTFDTTEIRDAALEDELL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181934g00004 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 64 184 - -
Stsc181934g00004 267 SMART rrm1_1 62 135 IPR000504 GO:0003723
Stsc181934g00004 267 Gene3D - 43 167 IPR012677 -
Stsc181934g00004 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 131 IPR000504 GO:0003723
Stsc181934g00004 267 CDD RRM_SF 64 134 - -
Stsc181934g00004 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Stsc181934g00004 267 SUPERFAMILY RNA-binding domain, RBD 64 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181934g00004 Stsc-Chr181934 12585 13388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181934g00004 42 159 Eukaryotic Initiation Factors Gene Family AT1G22760 32.558 9.07e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181934g00004 K12891 - ahf:112794598 132.494