Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181931g00001 ATGGTGAGAACCCCCTACTGTGACAAGAGTGGAGTGAGGAAGGGCACGTGGACACCTGAGGAAGACAAGAAGTTGATCGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGTCTTCTCCCTAAGTTTGCAGGTCTTGAAAGGTGTGGCAAGAGTTGCAGACTTAGGTGGTTGAACTATCTCAGACCCAACATCAAAAGAGGAAACTACACTCCACAAGAAGAAGAAACTATCATCAAACTTCACCAAAAGTTCGGCAATAGATGGTCCCTGATTGCGGCGAATTTGCCAGGAAGAACTGACAACGAGGTAAAGAATCACTGGCACACTGCTCTCAAGAAGCGTTTTGTAGACAAGTCATCATCATCAGGCACAAGCAAAAGTATAAAAGCTAAAGCCTCCAAGTTGAAGAATAATGATAATGAGCCCCCAACAACACTCATGGAGCAAGATTTCAATAGTTGTGACTCATCAGAGAACACTAATGCCCCATTGTCGTCTCCACAACCATCATCCTCTAGCGGTTTCTCTTGCGTAACAACAGATACTGAAACCGCCGCTATAAACCATGAGGATAATAATAATTTAATAGGTCTAGAGAATAACAATAATGATTATGAGCTTGGTTATTATTTTGACGCATATGATGAGGCAGTGAGTGGAGATTTCTGGACAGAACCATATCTCATTGACTTTTCCTATGTCCCTCCCAGTAGTGAAGAAACTTTGCCCTATCTGCTTCATGAACCTGAAGAATACTTTCCTAACCCTATTTGGGATATAGAATTCTGGGGCCAGAATAGCTTGTACCTGGAATGA 819 0.4274 MVRTPYCDKSGVRKGTWTPEEDKKLIAYVTRYGCWNWRLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYTPQEEETIIKLHQKFGNRWSLIAANLPGRTDNEVKNHWHTALKKRFVDKSSSSGTSKSIKAKASKLKNNDNEPPTTLMEQDFNSCDSSENTNAPLSSPQPSSSSGFSCVTTDTETAAINHEDNNNLIGLENNNNDYELGYYFDAYDEAVSGDFWTEPYLIDFSYVPPSSEETLPYLLHEPEEYFPNPIWDIEFWGQNSLYLE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181931g00001 272 MobiDBLite consensus disorder prediction 119 178 - -
Stsc181931g00001 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc181931g00001 272 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc181931g00001 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc181931g00001 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc181931g00001 272 Gene3D - 14 66 - -
Stsc181931g00001 272 FunFam Transcription factor RAX3 7 67 - -
Stsc181931g00001 272 CDD SANT 16 61 IPR001005 -
Stsc181931g00001 272 CDD SANT 69 110 IPR001005 -
Stsc181931g00001 272 Gene3D - 69 142 - -
Stsc181931g00001 272 SMART sant 13 63 IPR001005 -
Stsc181931g00001 272 SMART sant 66 114 IPR001005 -
Stsc181931g00001 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 180 - -
Stsc181931g00001 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc181931g00001 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc181931g00001 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181931g00001 Stsc-Chr181931 5288 6473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181931g00001 1 131 MYB Transcription Factor Family AT2G31180 64.885 9.42e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181931g00001 Myb_DNA-binding 7.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181931g00001 K09422 - gmx:100778518 256.914