Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181928g00005 ATGGAAAATAGGTACGGTGAACGATCCTGGAGAGACATAGTTGCAGGAACCAACAGATTCAACAACGATGCAAGGAATGATGTTAATGGTGGTCAGTTCCAGCGAAGTAGGGAAAATGGTAAGCTGGAAAACGCAAATTATGTGACGCGTGACAAGTGGATAGAGATTGAGAGAAGAACATACTCGATTTTTGTGGATAACCTACTGAGCCACATCTCAAAGAGATTCTTGTTCGGAGAGTTTGGGATCCACGGTAAGGTAGTTGATGTATTCATATCAAGAAAAATAAGACGGGGAAAGGAAGGTGTATTTGCATTCATCAGATTTGACTCGAAGGAGGACGCGATGCGGGCAATAGAGGTGTTGGATGGCTCATACATTTCTGGAAAACATATGGTAGTGAAGGAAGCACGTGTGCGGAAAAACAGAGTGAAGGCACAAGACAGTACGAGTTGGAGATGGACGCGAAAAATAGACCAAGAACGAACAAATGTGGAATACCAAAAGATAGTGGAGGGGATGATGCCAGTAACGTCAAAGGAGAAGACAAAGATCAGAAGAGAGGTTGAAGTAATGGTGGCAGAGAACCAGAAGGAATTACTGAATAGGAGTATCCTCGCTGAATCGTTTGAACCTATTAGATTTGGCTCAGTCGTTAAGAGGTTGGATGAGCTACAGTTGCAGTATGGGAAGATTGAATGCAGGGACCTTGGTCCTAGAAAATGCATCTTGTCGTTGGACATGATTAAGCTGCGAGATAAAGCTATCTCTGACGCAATTTTTCAGGATATTATCGATGAAGTAAGGGAGTACTGGGGATTCAAATGGTCGCATTCTTGA 840 0.431 MENRYGERSWRDIVAGTNRFNNDARNDVNGGQFQRSRENGKLENANYVTRDKWIEIERRTYSIFVDNLLSHISKRFLFGEFGIHGKVVDVFISRKIRRGKEGVFAFIRFDSKEDAMRAIEVLDGSYISGKHMVVKEARVRKNRVKAQDSTSWRWTRKIDQERTNVEYQKIVEGMMPVTSKEKTKIRREVEVMVAENQKELLNRSILAESFEPIRFGSVVKRLDELQLQYGKIECRDLGPRKCILSLDMIKLRDKAISDAIFQDIIDEVREYWGFKWSHS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181928g00005 279 CDD RRM_SF 63 135 - -
Stsc181928g00005 279 SMART rrm1_1 62 135 IPR000504 GO:0003723
Stsc181928g00005 279 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 59 160 - -
Stsc181928g00005 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Stsc181928g00005 279 Gene3D - 55 168 IPR012677 -
Stsc181928g00005 279 SUPERFAMILY RNA-binding domain, RBD 58 154 IPR035979 GO:0003676
Stsc181928g00005 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 131 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181928g00005 Stsc-Chr181928 5905 6744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181928g00005 54 143 Eukaryotic Initiation Factors Gene Family AT2G36660 30.000 1.41e-06 47.4