Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181927g00004 ATGAATAATAATAATAATAATGAGAGGGTTAATGTGAGTGATGATCATCATCATCAGTTAGGTGGAGGTGGTTCTTCATCATCATCGAATAATAACAACAAGAAGAAAGGGGAGAAGAAAGTTAGAAAACCAAGATACGCTTTCCAAACAAGGAGCCAAGTTGACATTCTTGATGATGGTTATCGATGGAGGAAGTATGGCCAAAAAGCTGTTAAGAACAACAAATTCCCAAGGAGCTATTACAGGTGCACACATCAAGGGTGCAACGTGAAGAAGCAAGTCCAACGTCTTACGAAAGATGAGGGTGTAGTGGTGACCACCTACGAAGGAGTGCACACTCACCCTATTGAGAAAACTACCGACAACTTTGAACACATTTTGAGTCAGATGCAAATATACACTCCCTTTTAA 411 0.399 MNNNNNNERVNVSDDHHHQLGGGGSSSSSNNNNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181927g00004 136 FunFam WRKY transcription factor 57 43 117 - -
Stsc181927g00004 136 MobiDBLite consensus disorder prediction 1 47 - -
Stsc181927g00004 136 SUPERFAMILY WRKY DNA-binding domain 49 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181927g00004 136 ProSiteProfiles WRKY domain profile. 52 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181927g00004 136 Gene3D WRKY domain 42 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181927g00004 136 SMART WRKY_cls 57 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181927g00004 136 Pfam WRKY DNA -binding domain 58 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181927g00004 136 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 119 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181927g00004 Stsc-Chr181927 19506 22164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181927g00004 45 136 WRKY Transcription Factor Family AT5G13080 88.043 1.78e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181927g00004 WRKY 8.8e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181927g00004 - - aip:107648396 222.631