Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181925g00001 ATGCCAGTTCCACTTGCTCCCTATCCAACACCACCACCGGCTCCATATACTCCTTCTCCGGCAGCAAATGGTCAACAGAATCAACTTGTGTGTTCTGGCTGTAGAAACCTTCTGCTCTATCCTTTTGGAGCCTCCTCTGTTTGCTGTGCTGTTTGCAATGCAGTGACCGCGGTGCCGCCACCGGGAACAGAAATGGCACAGTTAATCTGTGGAGGCTGCCATACTTTACTAATGTACATCCGTGGCGCGACAAGTGTCCAATGTTCGTGCTGTCACACTGTCAATCTAGCCATGGAAGCAAATCAGGTGGCACATGTCAACTGTGGCAGCTGCAAAATGCTACTCATGTATCAATATGGGGCTAGATCTGTTAAATGTGCAGTTTGCAATTTTGTTACTTCCATTGGGGCTTCAACAAGCATCACAGAGCAGAAGTTCATCACCTAA 447 0.481 MPVPLAPYPTPPPAPYTPSPAANGQQNQLVCSGCRNLLLYPFGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGSCKMLLMYQYGARSVKCAVCNFVTSIGASTSITEQKFIT 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181925g00001 148 SUPERFAMILY Multiheme cytochromes 31 129 IPR036280 -
Stsc181925g00001 148 NCBIfam zinc finger domain, LSD1 subclass 105 134 IPR005735 -
Stsc181925g00001 148 NCBIfam zinc finger domain, LSD1 subclass 28 58 IPR005735 -
Stsc181925g00001 148 NCBIfam zinc finger domain, LSD1 subclass 67 96 IPR005735 -
Stsc181925g00001 148 Pfam LSD1 zinc finger 70 94 IPR005735 -
Stsc181925g00001 148 Pfam LSD1 zinc finger 31 55 IPR005735 -
Stsc181925g00001 148 Pfam LSD1 zinc finger 108 132 IPR005735 -
Stsc181925g00001 148 PANTHER PROTEIN LSD1 17 58 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181925g00001 Stsc-Chr181925 8823 9970 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Stsc181925g00001 zf-LSD1 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181925g00001 - - mnt:21406053 245.358