Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181924g00002 ATGACTGAGATTCGGGAAGAGGTTGAAGTTGAATCAAATGGGCAAATTATTAAAGCTGTTATTTCAGAAGTGTTCTCCCAACGCCAAGTTTACATGGCTAAAGAGATTAAAACTGGTGAAATCGTGGCTCTGAAGAAAATTCGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTGCACCATGAAAATGTGATCAAGCTCAAGGAAATTGTCACTTCTCCAAATGGTAACAAATATAAAGGGGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGACCGTCCTGGGATGAGACTTACAGTTCCCCAAATTAAGCCAGTGGGTGTTGATGCTGATGTTCAAATAGATGACCTGTCAAGAGCTTTGATGTTCTCATATGTCTTCTACAAAATCATGTGGAGATGGAACAAGTTGATGACTGAAAATGGTCAATTAAAATCTATCATTAAGGAGTTGAAGGTACCTATCACCACTTTCATTGTTGAACCCTTTGTTCCTCACGACCAAGAATTCTACCTCTCCATTGTTTCCGAACGCCTCGGCTCTACCATCAGCTTCTTTGACTCTGGCGGCATCGATATTGAGGAAAACTGGGATAAGGTTAAGACTATATTCCTTTCGGAGGCGTGTGCACCGTTGATTGCTACACTTCCTTTGGAGTCCTTATCTGGCTCCCTTTCCAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCACATGGAGGGCATCTGTCACATGGCTATCAGGTTAAGTTTTGTTTCTGA 843 0.4081 MTEIREEVEVESNGQIIKAVISEVFSQRQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPNGNKYKGGIYMVFEYMDHDLTGLADRPGMRLTVPQIKPVGVDADVQIDDLSRALMFSYVFYKIMWRWNKLMTENGQLKSIIKELKVPITTFIVEPFVPHDQEFYLSIVSERLGSTISFFDSGGIDIEENWDKVKTIFLSEACAPLIATLPLESLSGSLSNFQVYTALLKPHERIMALDLPHGGHLSHGYQVKFCF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181924g00002 280 SUPERFAMILY Protein kinase-like (PK-like) 29 122 IPR011009 -
Stsc181924g00002 280 PANTHER CELL DIVISION PROTEIN KINASE 28 122 - -
Stsc181924g00002 280 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 169 229 - -
Stsc181924g00002 280 SMART serkin_6 14 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181924g00002 280 Gene3D - 146 242 - -
Stsc181924g00002 280 Gene3D Phosphorylase Kinase; domain 1 25 102 - -
Stsc181924g00002 280 SUPERFAMILY PLP-dependent transferases 236 276 IPR015424 -
Stsc181924g00002 280 FunFam Cyclin-dependent kinase 4 17 102 - -
Stsc181924g00002 280 Pfam Protein kinase domain 29 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181924g00002 280 Pfam Serine hydroxymethyltransferase 236 278 IPR039429 -
Stsc181924g00002 280 ProSiteProfiles Protein kinase domain profile. 2 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181924g00002 Stsc-Chr181924 15077 19967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181924g00002 29 122 Core Cell Cycle Gene Families AT5G10270 85.577 1.08e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc181924g00002 Pkinase 1.6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181924g00002 K08819 - gmx:100795971 179.104