Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181921g00001 ATGAAGAACACTTTTGATATTTGTTCTTGTTTACTCCTCCTTGTTACCCTGTTGGGTTTATTGTCATGTTGCAAAGCCAACCAGATTGACAGGCTTGATGAGTTGATTAATTCAAGAAGCTCAGGGAACCCTCCTCCTGACACTCTTTCTTGGACAAAAGAAGATGCATACAAATCATATTATTCTTCTTATCCTGTGGTTCCATCAACAGAGGGGCAAAAGTTAGCTGATAAAATAACTGCATTGCCTGGTCAACCCTATTATGGGTCCAGTTTTGACCAATATGCAGGGTATGTTACTGTTGATCCAAATGCTGGAAGAGAGCTTTTCTATTATTTTGCAGAGTCTCCAACTCACTCTGAGCAAAATCCTTTGGTTTTGTGGCTCAATGGAGGACCCGGTTGCTCGTCACTGGGTTATGGTGCATTTGAGGAGTTGGGACCCTTTAGAGTCAACCCTGATGGCCAAACCCTTTACCGCAACCAATTTTCTTGGAACGAATTGGCTAATGTGCTGTTCTTGGAATCCCCTGCTGGAGTGGGATTCTCCCAGTCAGGAAATTCATCACAAATTTTCCCTCCTTCCGGTGACAAGGCTGCTACTAAAGATGCCTATGCGTTCCTGGTTAACTGGCTAGAGCGGTTTCCGGAGTACAAAGACCGCGACATTTACATTACCGGGGAAAGCTATGCCGGTCACTATGTGCCTGAGCTTGCATACACAATTGTCACCAACAATTTTTTCAGAAAACTTGCCAACCAAACTGTCATCAACCTTCAAGGCGTTGCTATAGGGAACCCTTGGATTGATGATTTTACTGGTAGAAAGGGGTATTTTGATTACCTGTGGACTCACGCCTTGAACTCAGACCAAACTCATGAGCTCATTGAGAAATACTGTGACTTCAAATCCGGACACTTTTCCTCTATTTGCATCAATGCAACAACAAAATCCTACGTTGAGAGAGGGGATATTGTCTCCTCTGATATATACGCACCAACATGTCACGACACCTCTCTTAAACCTGGTCAAACTGGTTCAGTATACGATTTCGACACATGCTCTGATGTGTACGTGGGAGCATATCTAAACAGGCCAGAGGTCCAACAAGCTCTTCATGCAAAACCCACATATTGGACGCATTGCAGCTTGTTTCAGTGGAACGACAGGCCAATTACAGTCCTACCCCTCATCAAGAAGCTCATTGACAATAAAATTAATGTGTGGATATACAGTGGTGATGTAGATTCAAAAGTGTCTGTTACAGCCACCAGATATGCACTTAACATTCTCAAGCTCCCAATCGTGACCCCTTGGTATCCATGGTATTCTGAAAATGAGATTGGAGGATATGCGGTGGAATACGAAGGATTGGTATTTGCCACAGTGAGAGGGGCAGGGCATTTGGTTCCAAGCTGGCAGCCAGAAAAAGCGTTCAACTTAATCTTGGCATTCCTCAGTGGATATTCATCCCCATAA 1479 0.4388 MKNTFDICSCLLLLVTLLGLLSCCKANQIDRLDELINSRSSGNPPPDTLSWTKEDAYKSYYSSYPVVPSTEGQKLADKITALPGQPYYGSSFDQYAGYVTVDPNAGRELFYYFAESPTHSEQNPLVLWLNGGPGCSSLGYGAFEELGPFRVNPDGQTLYRNQFSWNELANVLFLESPAGVGFSQSGNSSQIFPPSGDKAATKDAYAFLVNWLERFPEYKDRDIYITGESYAGHYVPELAYTIVTNNFFRKLANQTVINLQGVAIGNPWIDDFTGRKGYFDYLWTHALNSDQTHELIEKYCDFKSGHFSSICINATTKSYVERGDIVSSDIYAPTCHDTSLKPGQTGSVYDFDTCSDVYVGAYLNRPEVQQALHAKPTYWTHCSLFQWNDRPITVLPLIKKLIDNKINVWIYSGDVDSKVSVTATRYALNILKLPIVTPWYPWYSENEIGGYAVEYEGLVFATVRGAGHLVPSWQPEKAFNLILAFLSGYSSP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181921g00001 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Stsc181921g00001 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 458 471 IPR001563 GO:0004185|GO:0006508
Stsc181921g00001 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Stsc181921g00001 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 211 236 IPR001563 GO:0004185|GO:0006508
Stsc181921g00001 492 SUPERFAMILY alpha/beta-Hydrolases 82 489 IPR029058 -
Stsc181921g00001 492 ProSitePatterns Serine carboxypeptidases, histidine active site. 458 475 IPR033124 GO:0004185
Stsc181921g00001 492 Pfam Serine carboxypeptidase 90 487 IPR001563 GO:0004185|GO:0006508
Stsc181921g00001 492 FunFam Carboxypeptidase 73 337 - -
Stsc181921g00001 492 Gene3D - 394 488 - -
Stsc181921g00001 492 ProSitePatterns Serine carboxypeptidases, serine active site. 225 232 IPR018202 GO:0004185
Stsc181921g00001 492 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Stsc181921g00001 492 Gene3D - 354 384 - -
Stsc181921g00001 492 Gene3D alpha/beta hydrolase 74 337 IPR029058 -
Stsc181921g00001 492 FunFam Carboxypeptidase 394 488 - -
Stsc181921g00001 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 78 475 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181921g00001 Stsc-Chr181921 21918 28113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181921g00001 342 488 Calmodulin-binding Proteins AT2G22960 29.487 6.54e-12 62.8