Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181913g00005 ATGGCTTCAGCACTTCTAACTGGAGCTGTTCTGCCTTCCATTTTTAATGTTGTTTTTGATAGGCTGTCCTCACCTGAATTTGCCATCTGGATCAAAGGGAAAAAGCTTACCCAGGATATGCTTGAAAGGCTGAAGACTAATCTTTATGCTGTTCAAACCTTTCTCAATGATGCTGAGCAGAAGCAGATCAAGGAGGGAGCAGTGAAGGACTGGCTCGCTAGTCTCAAAGATGCTATGTATGTTGCTGATGACTTGTTGGATGAATTCTTCACCAAAGCTGCCACTCAGATGGATCCAGGTACCTTCTTCTCTCGTTATCTCAATTTGCAAGATAGGAAGATAGCAAAACGGATGGAGGGAATAATTGAGAGGATAGAGTCTATTGTGAGGCAAATAGGCACTCTTGGTCATAGAGAGATTCCTAAGGAGAACATGTCATGGAGGATCACAACATCTCTAGGTGAAATATCTCATGTATATGGTAGGGAAAAAGACAAGGAGGCCATAGTGAGATTGTTGTTGGATGATGCTGACACTGGCGATGGGGATATATCTGTGATTCCCATTGTCGGCATGGGGGGAATAGGAAAGACTACTTTGGCCCAGTTGGTTTACCATGATGACAAAGTGAAAGAGAATTTTGATTTTCAAGCTTGGGTTTGTGTGTCAGAAGAGTTTGATGTCATGAAGGTCACAAAGAATTTACTTGAGGCAACAAAGAAGTGTACTTGTAACTTGAATAATTTGGATTTACTCCAGCAAGATTTAAAGGACCAGTTGTCAAGACGGAAATTCTTTATGGTCTTGGACGATGCATGGAATGAGAATCCTAGTGAGTGGAAGACTCTTCTACAACCTTTTCGAGATGGGGTCAAGGGAAGTAAAGTTCTCATGACTACTAGAAATGAAAAGGTGGCTAATGCCGCACAGAAGGCTTCCCCTTATAAACTGGGTTTATTGTCCGAAGAAGATTGCTGGTTAGTGTTTTCAAAACATGCACATCTTTCAACTTCTTCTATGGAGAATCCAGATTTGAAAAAGGTCGGCAGAGATATCGTAAAGAAGTGTGATGGCTTGCCCATGGCAGCTCAAGCCCTCGGAGGTTTATTGAGTGAAAATTCTGATGTGAATGATTGGAATCGTGTATTGAAGAGTGAGATTTGGGAGTTTCCTGATGAAGTTACTCCGGCACTACAAATCAGTTATTATTATCTTCCCCCGTGTCTGAAGGAGTGCTTTGTTTATTGTTCTTTGTTTCCCAAGGATTATGAGTTTGATAAAAATGAGCTAATCTTGTTATGGATGGCCCAGAGTTTTTTACGACCAGGAAAAAATCAGACTCCTGAAGAAGCTGGCGATGAATATTTTAATGAATTAACAGCAAGATCATTTTTCCAACTTCATAGTACTAAGGAAAATAAATTTGTAATGCATGATCTTATACATGATTTGGCAATGTTCTTTGCTGGAAAATTCTATTTCAGGGCTGAAGAGCATGAGAATGTTGAGAACGTTGTTGAGATTGATAATAAAACTCGTCATTTATCACATAATGCGAAAGGCAATTATCCATTCTCAAAACTTTTGAGATTTTGTAACTCAGTAAAACATACAAGGACGTTTCTTGAAATCAATTTGGACCCATGGATCCCATTTAATATGGAAAACACACCTTGTATCTTATTGTCAAAATTGAAGTACCTGAGAACTTTGTCGTTCAAATGCTTTCCTCTTGAATCACTGCCTGATTCAATAGGTGAGTTGATTCATCTGCGTTACTTGGATCTGTCTGAGACCCGCATTGAGACATTGCCTGAGTCATTGGGTAATCTGTACAATTTGCAGACCTTGAAGCTGGTTAGATGTTCGAAACTGAAAATACTTCCTGTTAGCATGAAAAACTTGGTAAAGTTACGCCATCTTGATATTGGAAATACTGGGTTGCGTGAGATGCCGAAAGGCATGAGCAAATTGAAAAGTTTGCAGTTTTTAAGCCATTATAAAGTTGGGAAGCATGAAGAGAATAAGATTAAAGAATTGGGAGCACTTGCAAATCTACAGAAGTCAATTTTCATTTACAAGTTAGAGAATGTGGTCAACATCGGTGAAGCTTCGATGGCAAGAATGTTTGATAAGAATGGCATTGAATCTTTGATGTTGAGTTGGTCTTGGAATGAACAAAACACATTTGCTTCCGAGATTGAAAGAGATATTCTGGACAAGTTACAGCCTCACATTAATTTGAAAGAGCTACAAATATGGAATTACAGGGGTACAATATTTCCAGATTGGTTGGGACATTCTTCCTACCACAACATCACCACACTAACTCTGTATGGTTGCAGAAATTGTTGTATGCTTCCTTCACTTGGACAATTGCCCGCTTTGAAGCGCCTCAAAATTTCTGATTTTGAAACGCTTGAGATTGTGGGTGCTGAGTTTTACCAGAAGGACGAATCTTGTGTGGAGAAACCATTTCCAAAGCTTGAAACTCTTAAGTTTCAGTCAATGGGTTGCTGGAAGGAGTGGTGTTCAATTAAGTTCAATGCATTTCCTCGACTTAAGCAGCTTATCATAAAGGAGTGTCCAATGTTGAGAGGAGAATTGCCGAATCATCTACCATCTTTGGAGTCACTTAAGATTCAGAATTGCGAGCAGCTCAGTTATTGCGTTCCAAGAGCTCCAGCGATGACATATTTAAGCATAACTGGTGCCAGTGAAGTGAGAATTGGGGAGCTTCCACCTTTACTGCGTCATCTATTTATTGGAGGAAGCCATTAA 2781 0.397 MASALLTGAVLPSIFNVVFDRLSSPEFAIWIKGKKLTQDMLERLKTNLYAVQTFLNDAEQKQIKEGAVKDWLASLKDAMYVADDLLDEFFTKAATQMDPGTFFSRYLNLQDRKIAKRMEGIIERIESIVRQIGTLGHREIPKENMSWRITTSLGEISHVYGREKDKEAIVRLLLDDADTGDGDISVIPIVGMGGIGKTTLAQLVYHDDKVKENFDFQAWVCVSEEFDVMKVTKNLLEATKKCTCNLNNLDLLQQDLKDQLSRRKFFMVLDDAWNENPSEWKTLLQPFRDGVKGSKVLMTTRNEKVANAAQKASPYKLGLLSEEDCWLVFSKHAHLSTSSMENPDLKKVGRDIVKKCDGLPMAAQALGGLLSENSDVNDWNRVLKSEIWEFPDEVTPALQISYYYLPPCLKECFVYCSLFPKDYEFDKNELILLWMAQSFLRPGKNQTPEEAGDEYFNELTARSFFQLHSTKENKFVMHDLIHDLAMFFAGKFYFRAEEHENVENVVEIDNKTRHLSHNAKGNYPFSKLLRFCNSVKHTRTFLEINLDPWIPFNMENTPCILLSKLKYLRTLSFKCFPLESLPDSIGELIHLRYLDLSETRIETLPESLGNLYNLQTLKLVRCSKLKILPVSMKNLVKLRHLDIGNTGLREMPKGMSKLKSLQFLSHYKVGKHEENKIKELGALANLQKSIFIYKLENVVNIGEASMARMFDKNGIESLMLSWSWNEQNTFASEIERDILDKLQPHINLKELQIWNYRGTIFPDWLGHSSYHNITTLTLYGCRNCCMLPSLGQLPALKRLKISDFETLEIVGAEFYQKDESCVEKPFPKLETLKFQSMGCWKEWCSIKFNAFPRLKQLIIKECPMLRGELPNHLPSLESLKIQNCEQLSYCVPRAPAMTYLSITGASEVRIGELPPLLRHLFIGGSH 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181913g00005 926 Gene3D - 31 135 - -
Stsc181913g00005 926 Gene3D - 401 486 IPR036388 -
Stsc181913g00005 926 PANTHER DISEASE RESISTANCE PROTEIN RP 41 886 IPR044974 GO:0006952
Stsc181913g00005 926 SMART LRR_typ_2 588 611 IPR003591 -
Stsc181913g00005 926 SMART LRR_typ_2 635 658 IPR003591 -
Stsc181913g00005 926 CDD RX-CC_like 41 128 IPR038005 -
Stsc181913g00005 926 FunFam Probable disease resistance protein At1g61300 147 313 - -
Stsc181913g00005 926 Gene3D - 144 314 IPR027417 -
Stsc181913g00005 926 Gene3D - 319 400 IPR042197 -
Stsc181913g00005 926 Gene3D Ribonuclease Inhibitor 531 922 IPR032675 -
Stsc181913g00005 926 Pfam Rx N-terminal domain 14 97 IPR041118 -
Stsc181913g00005 926 SUPERFAMILY L domain-like 476 904 - -
Stsc181913g00005 926 PRINTS Disease resistance protein signature 186 201 - -
Stsc181913g00005 926 PRINTS Disease resistance protein signature 259 273 - -
Stsc181913g00005 926 PRINTS Disease resistance protein signature 356 370 - -
Stsc181913g00005 926 PRINTS Disease resistance protein signature 871 887 - -
Stsc181913g00005 926 FunFam Probable disease resistance protein At1g63360 402 487 - -
Stsc181913g00005 926 Pfam NB-ARC domain 163 384 IPR002182 GO:0043531
Stsc181913g00005 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 416 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181913g00005 Stsc-Chr181913 20583 23363 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181913g00005 183 652 WRKY Transcription Factor Family AT5G45050 22.328 2.11e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181913g00005 - - ahf:112786545 1192.56