Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181909g00004 ATGGCAAAAGGTGCATGGCCAATAATTGGCCACCTCATGCTACTGGGTGGAACCCCAACACCCCACAAGAGCTTGGGTTCCATGGCTGAAAAATATGGACCCATTTTCAGCATCAAGCTTGGTGCAAAACGCGCTTTGGTAATAAATAACTGGGAAATTGCCAAGGAGTGTTACACCAAAAACGACGTCGTCGTTTCGTCTCGCTCCAAGCTTGTTGCGATCGAACACATAGCTTACAACCAAGCCAGTTTTGGATTTGCGCCGTACGGTCCATTCTGGCGCGAGATGCGTAAAATAGTTACGGTGTTCCTGTCGAATCGCCGAAGCATGGAGATGCTAAGGCAAGTTAGGGTTTGTGAAATTAGGAACTCTGTGAAAGATCTCTTTGATGTTTGGGACAACAGCAAGAACAAGAATCAGTCTGGTTACGTTTTGGTGGAGATGAAGGAATGGTTCACCCGATTGGTATTCAATATAGTGTTCCAAACTATGGCTGGGAAGCGATATTTTGGTACCAATGCTGTGGTTAGTGAGAAGGATGCAGAAAAGTGTGTGAAGGCTGTGAGGGAGTTTATGCATATGCTGGGCGTGTGCACCATGACAGATGCTATTCCTCTTTTGAGGTGGATCAATTTTGGAGTCAAAGCCATGAAAGAAACTGCTAAGGAATTGGATGTGATTCTTGATGAGTGGTTGGTGGAGCATACACAGAAGAAAAAATTTTTGGGAGAAAAGGTTATTGTAGAAAGTGATGATCACCAACATTTCATGGACATGATGATTTCAGTGCTTGATGGTGTAACCATTGAAGGCTTTGATGCTAATACTATAAACAAAGCCACAACATTGGCATTAATTTTGGGAGCAACTGACACAAGCACGGTTACACTTACATGGATACTATGTTTACTATTGAGACATCCTCATGTATTGGAAAAAGTAAAAGAAGAACTTAACACAAAAATAGGAAAAGAAAGATTCATAAATGAATCAGACATAAACAAACTAGAATATCTTCAAGCCATAGTTAAAGAGACTTTAAGGTTGTATCCACCAGGTCCACTTTCAGCACCTCGTGAATTCATAGAGGATTGTACTTTAGGTGGCTATAATATCAAAAAAGGAACTCGTTTGATAACAAATCTTTGGAAGATTCAAACAGACCCTAATGTTTGGGAATATCCAATGGAGTTTAAGCCGGAAAGGTTTCTTACAACCCACAAAGAAGTTGATGTTAGAGGACATCACTTTGAATTGTTACCATTTGGAAGTGGTAGAAGGATATGTCCTGGAATATCCTTTGGACTTAATATGATTCACTTAACTCTGGCTAATTTTCTGCACTCCTTTGATATTTCAAGTCCTTCTAGTGAACCTATTGACATGACTGAAATCCTTGGCATGACCAATGAAAAGGCCACTCCACTTGAGATTATGGTTAAGCCACTCTTGTCTCCTAAGTATTATGAAACTATGCCTTCTGATGAGTGCTAG 1494 0.4063 MAKGAWPIIGHLMLLGGTPTPHKSLGSMAEKYGPIFSIKLGAKRALVINNWEIAKECYTKNDVVVSSRSKLVAIEHIAYNQASFGFAPYGPFWREMRKIVTVFLSNRRSMEMLRQVRVCEIRNSVKDLFDVWDNSKNKNQSGYVLVEMKEWFTRLVFNIVFQTMAGKRYFGTNAVVSEKDAEKCVKAVREFMHMLGVCTMTDAIPLLRWINFGVKAMKETAKELDVILDEWLVEHTQKKKFLGEKVIVESDDHQHFMDMMISVLDGVTIEGFDANTINKATTLALILGATDTSTVTLTWILCLLLRHPHVLEKVKEELNTKIGKERFINESDINKLEYLQAIVKETLRLYPPGPLSAPREFIEDCTLGGYNIKKGTRLITNLWKIQTDPNVWEYPMEFKPERFLTTHKEVDVRGHHFELLPFGSGRRICPGISFGLNMIHLTLANFLHSFDISSPSSEPIDMTEILGMTNEKATPLEIMVKPLLSPKYYETMPSDEC 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181909g00004 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 422 431 IPR017972 GO:0005506|GO:0016705
Stsc181909g00004 497 PANTHER CYTOCHROME P450 82C3-RELATED 2 489 - -
Stsc181909g00004 497 SUPERFAMILY Cytochrome P450 5 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 Gene3D Cytochrome P450 2 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 CDD CYP82 33 482 - -
Stsc181909g00004 497 PRINTS E-class P450 group I signature 53 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS E-class P450 group I signature 297 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS E-class P450 group I signature 381 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS E-class P450 group I signature 155 173 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS E-class P450 group I signature 340 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS E-class P450 group I signature 419 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS E-class P450 group I signature 429 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS E-class P450 group I signature 29 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 FunFam Cytochrome P450 82C4 1 481 - -
Stsc181909g00004 497 Pfam Cytochrome P450 5 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS P450 superfamily signature 341 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS P450 superfamily signature 288 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181909g00004 497 PRINTS P450 superfamily signature 420 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181909g00004 Stsc-Chr181909 25664 29424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181909g00004 4 489 Cytochrome P450 AT4G31940 47.984 2.28e-168 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181909g00004 - - gmx:100793075 651.358