Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181906g00002 ATGAGCATTAGCGAGAACGGTGAAAAGAGTACTTGGGTTCCTCCAGAAAACCAGAATGCATCTAGTTCTGCTCAAGTGACAAATCCACCCAGCAAGGATAAATCTTGGGTTGGCACATCTTCAGTGCCCGAGTCGGGCTCAGAACCTCGTATCCTGGAGCAGCCAGCTGGACCTTCCAATGCATGCGTACCTAAGTTATATTGTCCCGGGAAAACGCCTCCTGCACTCTGTGAAGATGATGATATATATGACGATTTCAACATGGATGAAGTGGATCTGGATCTTGAGAACTATGAGGAACTTTTTGGTGTGGCACTCAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGGATTGATAGCTTATTTGGGACAAAGGAAATGTCTGCCAGCGCTGGTGACTCCAATTGTCAGGGTGCGGTTGCTGCTGAGGGCTCAACGGGATTAATAAATGCAACACAACCAGCATGCAGCAATGCTGAATCTGCAGATTCAATGATGAGCACTAAAACTGAACCAATTATTTGTTTTACTGGAAGGCAATCCCAATCGAACATTTCTTTTTCTGGTGCAACTAAAGATGGTGGTGGTGGTGGTGGCGGTGGTGGTGGAGACTATCAAGACTGCGGGGCTTCTTCGATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGCTCTATGCAATCCGCTAACCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGACACGAAAGTTTGAAAAGCGAGTAAGGTATGCCTCTCGTAAGGCTAGGGCTGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCCGGTGATGTCTATGACTACGACCCGATGAGCCAAACCAGAAGTTACTGA 879 0.4767 MSISENGEKSTWVPPENQNASSSAQVTNPPSKDKSWVGTSSVPESGSEPRILEQPAGPSNACVPKLYCPGKTPPALCEDDDIYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKEMSASAGDSNCQGAVAAEGSTGLINATQPACSNAESADSMMSTKTEPIICFTGRQSQSNISFSGATKDGGGGGGGGGGDYQDCGASSMLLMGEPPWCPPCPESSMQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDVYDYDPMSQTRSY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181906g00002 292 Pfam CCT motif 235 277 IPR010402 GO:0005515
Stsc181906g00002 292 MobiDBLite consensus disorder prediction 1 47 - -
Stsc181906g00002 292 MobiDBLite consensus disorder prediction 244 263 - -
Stsc181906g00002 292 ProSiteProfiles CCT domain profile. 235 277 IPR010402 GO:0005515
Stsc181906g00002 292 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 78 279 - -
Stsc181906g00002 292 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181906g00002 Stsc-Chr181906 9790 13410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181906g00002 32 292 C2C2-CO-like Transcription Factor Family AT3G07650 51.673 1.79e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181906g00002 CCT 4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181906g00002 - - gmx:100783016 441.425