Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181898g00002 ATGGAGGACTTCTATGGCTTCCACTACACATCACAAGACGAATACCTCTCTTACTCCCACCACTACGCACCACCACCAATACCATCACCACCACCACCACCTCTTCTAAAACTACTTTCAACTACCAAACCTACTAATTTCTTGATGAAGCACCAACAATTACAAGAAGTAGAAGAAGAGGATGAGGTTTCTAATATTGCAGCAAAAATAAAAGTAGCTTCTCATCCACTTTTTCCCCAGCTTCTCCATGCTCACATCGATTTTCAAAAGGTGGGCGCCACGGCGGAGATGGCGGCGGAGCAATTAGAGGATACTATTATTGGCATACATAATCAAATAATACCTAATAACTTGTCTTCTTCTGATGATCCTGTTCCTGATCCTGATCCTGAGCTTGATCATTTCATGGAAACGTATTGCAATATGTTGGGAAAGTTGAAGGATGATATTTCAAGGCCTTTTGAAGAAGCAAAGGCTTTCCTCAACCACATGGAAACACACCTCAACTCCATCGTCCTCTCCAACAACATCTTTGATAATGAAGTAATTACTGGATCATCTAAAAAGTGTTTGCACAATGAAAATGATGATCAGAAAGAGAGAAATATTATTAATCAACATCATCAAGACCTAAAGGGAGACCTTCTAAGAAGATATAGTGGGTACATTACTAATCTGAAGCATGAATTCTCCAAAAACAAGAAGAAAGAAAGGTTACCCAATGAAGCAAAGCAAATATTACTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCAACGGATGCAGATAAGGTTGCCCTAGCTGAATGGACTGGTCTTGATACAAAGCAGATAAACAACTGGTTTATAAACGAAAGGAAGCGCCATTGGAAACCATCAGAGGAATTGGAAACCACTGTAGTTTTGGATGGTATATATGGACCTCTTTGTATCACTGAGGACTAG 948 0.3987 MEDFYGFHYTSQDEYLSYSHHYAPPPIPSPPPPPLLKLLSTTKPTNFLMKHQQLQEVEEEDEVSNIAAKIKVASHPLFPQLLHAHIDFQKVGATAEMAAEQLEDTIIGIHNQIIPNNLSSSDDPVPDPDPELDHFMETYCNMLGKLKDDISRPFEEAKAFLNHMETHLNSIVLSNNIFDNEVITGSSKKCLHNENDDQKERNIINQHHQDLKGDLLRRYSGYITNLKHEFSKNKKKERLPNEAKQILLAWWNIHFKWPYPTDADKVALAEWTGLDTKQINNWFINERKRHWKPSEELETTVVLDGIYGPLCITED 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181898g00002 315 Gene3D - 227 300 - -
Stsc181898g00002 315 ProSitePatterns 'Homeobox' domain signature. 268 291 IPR017970 GO:0000981|GO:0006355
Stsc181898g00002 315 Pfam KNOX2 domain 128 171 IPR005541 GO:0003677|GO:0005634
Stsc181898g00002 315 SMART KNOX1_2 66 111 IPR005540 GO:0003677|GO:0005634
Stsc181898g00002 315 Pfam Homeobox KN domain 250 289 IPR008422 GO:0003677|GO:0006355
Stsc181898g00002 315 SMART HOX_1 232 297 IPR001356 GO:0003677
Stsc181898g00002 315 ProSiteProfiles ELK domain profile. 210 230 IPR005539 GO:0003677
Stsc181898g00002 315 Pfam KNOX1 domain 69 99 IPR005540 GO:0003677|GO:0005634
Stsc181898g00002 315 Pfam ELK domain 210 231 IPR005539 GO:0003677
Stsc181898g00002 315 SMART ELK_2 131 151 IPR005539 GO:0003677
Stsc181898g00002 315 SMART ELK_2 210 231 IPR005539 GO:0003677
Stsc181898g00002 315 CDD homeodomain 234 294 IPR001356 GO:0003677
Stsc181898g00002 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 296 - -
Stsc181898g00002 315 ProSiteProfiles 'Homeobox' domain profile. 230 293 IPR001356 GO:0003677
Stsc181898g00002 315 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Stsc181898g00002 315 SUPERFAMILY Homeodomain-like 232 300 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181898g00002 Stsc-Chr181898 3729 8905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181898g00002 60 297 Homeobox Transcription Factor Family AT1G23380 46.341 1.27e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc181898g00002 KNOX2 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181898g00002 - - ccaj:109811765 282.337